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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 7
  • golgi 6
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, secretory
BaCelLo:secretory
EpiLoc:cytosol
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:golgi
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc02g085000.2.1
Solyc06g074170.2.1
Solyc07g054210.2.1
Solyc10g006900.2.1
Solyc11g068750.1.1
Solyc12g013710.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G04340.1 Solyc07g054210.2.1 AT1G03630.1 21798944
AT1G04340.1 Solyc10g006900.2.1 AT1G03630.1 21798944
AT1G04340.1 Solyc12g013710.1.1 AT1G03630.1 21798944
AT1G04340.1 Solyc02g085000.2.1 AT3G50910.1 21798944
AT5G43460.1 Solyc06g074170.2.1 AT5G22290.1 21798944
AT5G43460.1 Solyc11g068750.1.1 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400042097 Potato cytosol 80.25 64.62
VIT_05s0049g00200.t01 Wine grape extracellular 58.6 58.6
AT5G43460.1 Thale cress extracellular 56.05 57.14
AT1G04340.1 Thale cress plasma membrane 57.32 56.6
Bra015305.1-P Field mustard extracellular, plasma membrane, vacuole 57.96 56.17
Bra027498.1-P Field mustard plasma membrane 56.05 56.05
CDY32939 Canola plasma membrane 56.05 56.05
CDY59304 Canola plasma membrane 56.05 56.05
CDY18220 Canola extracellular, plasma membrane, vacuole 57.32 55.56
CDY60669 Canola extracellular, plasma membrane, vacuole 57.32 55.56
KRH34500 Soybean extracellular 55.41 55.41
KRH31721 Soybean endoplasmic reticulum 55.41 55.41
KRG92302 Soybean extracellular 55.41 55.41
KRG90387 Soybean extracellular 54.78 54.78
CDX86640 Canola extracellular, plasma membrane, vacuole 56.69 54.27
Bra030565.1-P Field mustard plasma membrane 56.69 53.94
CDY15499 Canola plasma membrane 56.69 53.94
TraesCS4A01G415500.1 Wheat extracellular 50.96 50.96
OQU81217 Sorghum extracellular 50.96 50.96
GSMUA_Achr11P... Banana endoplasmic reticulum, extracellular, plasma membrane 50.32 50.32
HORVU4Hr1G080140.1 Barley extracellular 49.68 49.68
TraesCS4D01G312900.1 Wheat extracellular 49.68 49.68
Os03t0149200-01 Rice extracellular 49.68 49.68
GSMUA_Achr4P26720_001 Banana extracellular 49.04 49.36
TraesCS4B01G316300.1 Wheat extracellular 49.04 49.04
Os04t0181100-01 Rice plasma membrane 49.04 49.04
GSMUA_Achr2P04100_001 Banana extracellular 49.04 48.73
TraesCS2D01G029000.1 Wheat extracellular 48.41 48.41
GSMUA_Achr1P01370_001 Banana extracellular 47.77 48.08
TraesCS2A01G026900.1 Wheat extracellular 47.77 47.77
TraesCS2B01G040200.1 Wheat extracellular 47.77 47.77
EER92848 Sorghum extracellular 47.13 47.13
Zm00001d048402_P001 Maize extracellular, golgi, plasma membrane 47.13 47.13
Solyc03g005470.2.1 Tomato plastid 47.13 46.84
Os10t0445500-01 Rice plasma membrane 47.13 46.84
Zm00001d027680_P003 Maize endoplasmic reticulum, extracellular, plasma membrane 48.41 46.34
GSMUA_Achr8P14320_001 Banana plasma membrane 45.86 45.57
Solyc09g089670.2.1 Tomato extracellular, plasma membrane, vacuole 45.86 44.72
Zm00001d032568_P001 Maize endoplasmic reticulum, extracellular, vacuole 30.57 44.44
Zm00001d032483_P001 Maize endoplasmic reticulum, extracellular, vacuole 33.12 41.94
Zm00001d018662_P001 Maize endoplasmic reticulum, extracellular, plasma membrane 42.68 41.88
KRH73866 Soybean plastid 36.31 38.26
CDY10063 Canola plasma membrane 43.95 38.12
Zm00001d025020_P001 Maize extracellular, golgi, plasma membrane 49.04 31.82
Protein Annotations
EnsemblPlants:Solyc06g053660.2.1EnsemblPlantsGene:Solyc06g053660.2GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:HR_lesion
PANTHER:PTHR31474PANTHER:PTHR31474:SF4PFAM:PF05514SEG:segSignalP:SignalP-noTMTMHMM:TMhelix
UniParc:UPI0002765755UniProt:K4C653MapMan:35.2:::
Description
No Description!
Coordinates
chr6:+:36496318..36500075
Molecular Weight (calculated)
17147.6 Da
IEP (calculated)
10.147
GRAVY (calculated)
0.620
Length
157 amino acids
Sequence
(BLAST)
001: MGFLSFLGRV LFASVFILSA WQMFNDFGED GGPAAKELAP KVAGLQDFLV SKLGTGIPKI DVRHVVAAFM ALKGMGGLLL VFGSMTGAVL LICYLIMATP
101: LLHDISHFNI GEPQYFIVLQ EFLQCLAFLG ALLFFVGMKN SINRRLTKKK TPKSKTT
Best Arabidopsis Sequence Match ( AT1G04340.1 )
(BLAST)
001: MGFFSFLGRV LFASLFILSA WQMFNDFGTD GGPAAKELAP KLDLTKAHLS SILGVSLPNL EVKQVVWAIV ALKGLGGLLF VIGNIFGAYL LAVYLVVVSP
101: ILYDFYNYGP EDRQFSLLLT EFLQSVALLG ALLFFIGMKN STTSSKRILK KRTPKPKAA
Arabidopsis Description
At1g04340/F19P19_23 [Source:UniProtKB/TrEMBL;Acc:O22690]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.