Factsheet for GSMUA_Achr2P04100_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P12060_001
GSMUA_Achr1P20280_001
GSMUA_Achr2P22980_001
GSMUA_Achr3P14270_001
GSMUA_Achr5P20880_001
GSMUA_Achr6P08980_001
GSMUA_Achr7P04280_001
GSMUA_Achr8P11120_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04340.1	GSMUA_Achr11P...	AT1G03630.1	21798944
AT1G04340.1	GSMUA_Achr3P14270_001	AT1G03630.1	21798944
AT1G04340.1	GSMUA_Achr7P04280_001	AT1G03630.1	21798944
AT1G04340.1	GSMUA_Achr1P12060_001	AT3G50910.1	21798944
AT1G04340.1	GSMUA_Achr2P22980_001	AT3G50910.1	21798944
AT1G04340.1	GSMUA_Achr6P08980_001	AT3G50910.1	21798944
AT5G43460.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT5G43460.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT5G43460.1	GSMUA_Achr1P20280_001	AT3G60600.1	21798944
AT5G43460.1	GSMUA_Achr5P20880_001	AT3G60600.1	21798944
AT5G43460.1	GSMUA_Achr8P11120_001	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P26720_001	Banana	extracellular	73.42	74.36
GSMUA_Achr8P14320_001	Banana	plasma membrane	74.05	74.05
GSMUA_Achr1P01370_001	Banana	extracellular	72.78	73.72
GSMUA_Achr11P...	Banana	endoplasmic reticulum, extracellular, plasma membrane	70.89	71.34
KRH32166	Soybean	endoplasmic reticulum	65.82	66.67
KRH19536	Soybean	endoplasmic reticulum	63.92	64.74
KRH67349	Soybean	plasma membrane	62.66	63.06
CDY12466	Canola	endoplasmic reticulum	62.66	62.66
CDY47153	Canola	endoplasmic reticulum	62.66	62.66
VIT_05s0049g00200.t01	Wine grape	extracellular	62.03	62.42
Bra039861.1-P	Field mustard	plasma membrane	62.03	62.03
KRG95647	Soybean	plasma membrane	61.39	61.78
Solyc09g089670.2.1	Tomato	extracellular, plasma membrane, vacuole	62.66	61.49
AT4G14420.1	Thale cress	plasma membrane	61.39	61.39
Bra041032.1-P	Field mustard	extracellular	58.86	59.62
CDY12771	Canola	extracellular	58.86	59.62
CDY49421	Canola	extracellular	58.23	58.97
Solyc03g005470.2.1	Tomato	plastid	58.23	58.23
CDY59304	Canola	plasma membrane	55.7	56.05
CDY32939	Canola	plasma membrane	55.06	55.41
Bra027498.1-P	Field mustard	plasma membrane	55.06	55.41
AT5G43460.1	Thale cress	extracellular	53.16	54.55
KRH31721	Soybean	endoplasmic reticulum	53.8	54.14
KRG90387	Soybean	extracellular	53.16	53.5
AT1G04340.1	Thale cress	plasma membrane	53.8	53.46
CDY15499	Canola	plasma membrane	55.7	53.33
Bra030565.1-P	Field mustard	plasma membrane	55.7	53.33
KRG92302	Soybean	extracellular	52.53	52.87
CDX86640	Canola	extracellular, plasma membrane, vacuole	54.43	52.44
KRH34500	Soybean	extracellular	51.9	52.23
CDY60669	Canola	extracellular, plasma membrane, vacuole	53.16	51.85
Bra015305.1-P	Field mustard	extracellular, plasma membrane, vacuole	53.16	51.85
CDY18220	Canola	extracellular, plasma membrane, vacuole	52.53	51.23
Solyc06g053660.2.1	Tomato	plasma membrane	48.73	49.04
VIT_05s0049g00210.t01	Wine grape	plastid	70.89	48.7
PGSC0003DMT400044245	Potato	cytosol	53.8	48.02
PGSC0003DMT400034860	Potato	plastid	53.16	45.65
KRH73866	Soybean	plastid	35.44	37.58
CDY10063	Canola	plasma membrane	40.51	35.36
PGSC0003DMT400042097	Potato	cytosol	41.14	33.33

Protein Annotations

EnsemblPlants:GSMUA_Achr2P04100_001	EnsemblPlants:GSMUA_Achr2T04100_001	EnsemblPlantsGene:GSMUA_Achr2G04100_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:HR_lesion	PANTHER:PTHR31474	PANTHER:PTHR31474:SF1	PFAM:PF05514	SEG:seg	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI0002948C09	UniProt:M0S501	MapMan:35.2	:	:

Description

nicotiana lesion-inducing like, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G04100_001]

Coordinates

chr2:-:9585813..9589521

Molecular Weight (calculated)

17481.8 Da

IEP (calculated)

10.149

GRAVY (calculated)

0.602

Length

158 amino acids

Sequence
(BLAST)

001: MGFVSFAGRV LFASVFLLSA YQEIIEFGVD GGPAAKVVAP KYDTFVNHVT LHLGVKVPEV EMKHVIAATI VLKGLGGLLF IFSSSFGAYL LLLHLAVVTP
101: IVFDFYNYDI QKPEFVELFF KFTQNLALFG ALLFFLGMKN SIPKRQSKRK AAPKTKTV

Best Arabidopsis Sequence Match ( AT4G14420.1 )
(BLAST)

001: MELASFLGRA LFVSVFLLSA WQEFNDFGED GGRSAKSLKP KFNAFVNHVT THTGQQLPPV DMKILVAAAI ALKGIGGLLF VFGSSLGAYL LLLHQAVATP
101: ILYDFYNYDV DRKEFGQLFS KFTQSLALLG GLLFFIGMKN SRKHGRQLRK KAPKAKAN

Arabidopsis Description

AT4g14420/dl3250c [Source:UniProtKB/TrEMBL;Acc:O23298]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.