Factsheet for PGSC0003DMT400034860

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
golgi 2
nucleus 1
peroxisome 1
plasma membrane 2
extracellular 2
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	golgi
Plant-mPloc:	nucleus, peroxisome, plasma membrane, plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g005470.2.1	Tomato	plastid	72.83	84.81
GSMUA_Achr1P01370_001	Banana	extracellular	50.0	58.97
CDY12466	Canola	endoplasmic reticulum	50.0	58.23
AT4G14420.1	Thale cress	plasma membrane	50.0	58.23
CDY47153	Canola	endoplasmic reticulum	50.0	58.23
PGSC0003DMT400044245	Potato	cytosol	55.43	57.63
Bra039861.1-P	Field mustard	plasma membrane	48.91	56.96
KRH32166	Soybean	endoplasmic reticulum	47.83	56.41
KRH19536	Soybean	endoplasmic reticulum	47.28	55.77
Zm00001d032568_P001	Maize	endoplasmic reticulum, extracellular, vacuole	32.61	55.56
GSMUA_Achr11P...	Banana	endoplasmic reticulum, extracellular, plasma membrane	46.74	54.78
KRG95647	Soybean	plasma membrane	46.74	54.78
GSMUA_Achr4P26720_001	Banana	extracellular	46.2	54.49
Bra041032.1-P	Field mustard	extracellular	46.2	54.49
Zm00001d027680_P003	Maize	endoplasmic reticulum, extracellular, plasma membrane	48.37	54.27
TraesCS4D01G312900.1	Wheat	extracellular	46.2	54.14
Zm00001d048402_P001	Maize	extracellular, golgi, plasma membrane	46.2	54.14
Os03t0149200-01	Rice	extracellular	46.2	54.14
KRH67349	Soybean	plasma membrane	46.2	54.14
EER92848	Sorghum	extracellular	46.2	54.14
HORVU4Hr1G080140.1	Barley	extracellular	46.2	54.14
CDY49421	Canola	extracellular	45.65	53.85
TraesCS4A01G415500.1	Wheat	extracellular	45.65	53.5
TraesCS4B01G316300.1	Wheat	extracellular	45.65	53.5
CDY12771	Canola	extracellular	45.11	53.21
GSMUA_Achr2P04100_001	Banana	extracellular	45.65	53.16
GSMUA_Achr8P14320_001	Banana	plasma membrane	44.02	51.27
Zm00001d032483_P001	Maize	endoplasmic reticulum, extracellular, vacuole	34.24	50.81
Os10t0445500-01	Rice	plasma membrane	42.93	50.0
Zm00001d018662_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	42.93	49.38
Os04t0181100-01	Rice	plasma membrane	41.3	48.41
TraesCS2B01G040200.1	Wheat	extracellular	40.22	47.13
OQU81217	Sorghum	extracellular	40.22	47.13
TraesCS2A01G026900.1	Wheat	extracellular	39.67	46.5
TraesCS2D01G029000.1	Wheat	extracellular	39.13	45.86
VIT_05s0049g00210.t01	Wine grape	plastid	50.54	40.43
Zm00001d025020_P001	Maize	extracellular, golgi, plasma membrane	38.59	29.34
PGSC0003DMT400042097	Potato	cytosol	30.98	29.23

Protein Annotations

EnsemblPlants:PGSC0003DMT400034860	EnsemblPlantsGene:PGSC0003DMG400013399	EntrezGene:102599623	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:HR_lesion	PANTHER:PTHR31474	PANTHER:PTHR31474:SF1	PFAM:PF05514	PGSC:PGSC0003DMG400013399	SEG:seg
TMHMM:TMhelix	UniParc:UPI000295FB31	UniProt:M1B1E7	MapMan:35.2	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400013399]

Coordinates

chr3:+:551505..556768

Molecular Weight (calculated)

20535.5 Da

IEP (calculated)

10.751

GRAVY (calculated)

0.102

Length

184 amino acids

Sequence
(BLAST)

001: MGCGLVVQLL DYLTFNQMSL IRAYVRKNSY RKRQSRKRPV REKALSLQFN DFGVDGGSAA KALKPKFDVL SKHVATHTGF EVPHVEMKHL ILGALIMKSL
101: GSLLFVFGSS LGAIILVLHQ AIATPVLYDF YNYDVDKKEF AQLFVKFTQS LALLGALFFF IGMTSSMPKR SSLPKKKAPK TKTG

Best Arabidopsis Sequence Match ( AT4G14420.1 )
(BLAST)

001: MELASFLGRA LFVSVFLLSA WQEFNDFGED GGRSAKSLKP KFNAFVNHVT THTGQQLPPV DMKILVAAAI ALKGIGGLLF VFGSSLGAYL LLLHQAVATP
101: ILYDFYNYDV DRKEFGQLFS KFTQSLALLG GLLFFIGMKN SRKHGRQLRK KAPKAKAN

Arabidopsis Description

AT4g14420/dl3250c [Source:UniProtKB/TrEMBL;Acc:O23298]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.