Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER92848 | Sorghum | extracellular | 90.24 | 94.27 |
| Zm00001d048402_P001 | Maize | extracellular, golgi, plasma membrane | 89.02 | 92.99 |
| Zm00001d032568_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 59.76 | 90.74 |
| Zm00001d018662_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 87.2 | 89.38 |
| Zm00001d032483_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 65.24 | 86.29 |
| Os03t0149200-01 | Rice | extracellular | 79.88 | 83.44 |
| TraesCS4D01G312900.1 | Wheat | extracellular | 76.83 | 80.25 |
| HORVU4Hr1G080140.1 | Barley | extracellular | 76.22 | 79.62 |
| TraesCS4B01G316300.1 | Wheat | extracellular | 75.61 | 78.98 |
| TraesCS4A01G415500.1 | Wheat | extracellular | 75.61 | 78.98 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, extracellular, plasma membrane | 72.56 | 75.8 |
| GSMUA_Achr1P01370_001 | Banana | extracellular | 70.73 | 74.36 |
| GSMUA_Achr4P26720_001 | Banana | extracellular | 70.12 | 73.72 |
| GSMUA_Achr8P14320_001 | Banana | plasma membrane | 67.68 | 70.25 |
| KRH32166 | Soybean | endoplasmic reticulum | 61.59 | 64.74 |
| CDY47153 | Canola | endoplasmic reticulum | 60.98 | 63.29 |
| CDY12466 | Canola | endoplasmic reticulum | 60.98 | 63.29 |
| Bra041032.1-P | Field mustard | extracellular | 59.76 | 62.82 |
| KRH19536 | Soybean | endoplasmic reticulum | 59.76 | 62.82 |
| Solyc09g089670.2.1 | Tomato | extracellular, plasma membrane, vacuole | 61.59 | 62.73 |
| KRH67349 | Soybean | plasma membrane | 59.76 | 62.42 |
| CDY49421 | Canola | extracellular | 59.15 | 62.18 |
| CDY12771 | Canola | extracellular | 59.15 | 62.18 |
| Solyc03g005470.2.1 | Tomato | plastid | 59.76 | 62.03 |
| Bra039861.1-P | Field mustard | plasma membrane | 59.76 | 62.03 |
| KRG95647 | Soybean | plasma membrane | 58.54 | 61.15 |
| AT4G14420.1 | Thale cress | plasma membrane | 57.93 | 60.13 |
| VIT_05s0049g00200.t01 | Wine grape | extracellular | 56.1 | 58.6 |
| KRG92302 | Soybean | extracellular | 53.66 | 56.05 |
| KRH34500 | Soybean | extracellular | 52.44 | 54.78 |
| KRG90387 | Soybean | extracellular | 51.22 | 53.5 |
| KRH31721 | Soybean | endoplasmic reticulum | 50.61 | 52.87 |
| CDY59304 | Canola | plasma membrane | 50.61 | 52.87 |
| Bra030565.1-P | Field mustard | plasma membrane | 53.05 | 52.73 |
| CDY15499 | Canola | plasma membrane | 53.05 | 52.73 |
| Bra015305.1-P | Field mustard | extracellular, plasma membrane, vacuole | 51.83 | 52.47 |
| CDY18220 | Canola | extracellular, plasma membrane, vacuole | 51.83 | 52.47 |
| CDY60669 | Canola | extracellular, plasma membrane, vacuole | 51.22 | 51.85 |
| CDX86640 | Canola | extracellular, plasma membrane, vacuole | 51.83 | 51.83 |
| CDY32939 | Canola | plasma membrane | 49.39 | 51.59 |
| Bra027498.1-P | Field mustard | plasma membrane | 49.39 | 51.59 |
| AT1G04340.1 | Thale cress | plasma membrane | 50.0 | 51.57 |
| AT5G43460.1 | Thale cress | extracellular | 48.17 | 51.3 |
| PGSC0003DMT400044245 | Potato | cytosol | 52.44 | 48.59 |
| Solyc06g053660.2.1 | Tomato | plasma membrane | 46.34 | 48.41 |
| PGSC0003DMT400034860 | Potato | plastid | 54.27 | 48.37 |
| VIT_05s0049g00210.t01 | Wine grape | plastid | 64.02 | 45.65 |
| Zm00001d025020_P001 | Maize | extracellular, golgi, plasma membrane | 66.46 | 45.04 |
| KRH73866 | Soybean | plastid | 37.2 | 40.94 |
| CDY10063 | Canola | plasma membrane | 40.85 | 37.02 |
| PGSC0003DMT400042097 | Potato | cytosol | 40.24 | 33.85 |
Protein Annotations
| EnsemblPlants:Zm00001d027680_P003 | EnsemblPlants:Zm00001d027680_T003 | EnsemblPlantsGene:Zm00001d027680 | EntrezGene:100280583 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:HR_lesion | PANTHER:PTHR31474 | PANTHER:PTHR31474:SF1 | PFAM:PF05514 | ProteinID:ONL93677.1 |
| SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0008449870 | UniProt:A0A1D6JNS5 | MapMan:35.2 |
Description
HR-like lesion-inducing protein-related
Coordinates
chr1:-:11011199..11015864
Molecular Weight (calculated)
17744.0 Da
IEP (calculated)
10.250
GRAVY (calculated)
0.526
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFVSFVGRV LFVAAFLLSA YQEFNEFGAD GGPAAKALRP KFNVFVKNVS AHLGVAVPHI ELKHVIAATI GLKGLGSLLF ILSSSLGAYL LLLYLALITP
101: IIHDFYNYDM EKAEFAGLFA KFTQAITDFS DLALIGALLF FLGMKNSIPK RQGGKKKAPK AKTN
101: IIHDFYNYDM EKAEFAGLFA KFTQAITDFS DLALIGALLF FLGMKNSIPK RQGGKKKAPK AKTN
001: MGFFSFLGRV LFASLFILSA WQMFNDFGTD GGPAAKELAP KLDLTKAHLS SILGVSLPNL EVKQVVWAIV ALKGLGGLLF VIGNIFGAYL LAVYLVVVSP
101: ILYDFYNYGP EDRQFSLLLT EFLQSVALLG ALLFFIGMKN STTSSKRILK KRTPKPKAA
101: ILYDFYNYGP EDRQFSLLLT EFLQSVALLG ALLFFIGMKN STTSSKRILK KRTPKPKAA
Arabidopsis Description
At1g04340/F19P19_23 [Source:UniProtKB/TrEMBL;Acc:O22690]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.