Factsheet for Zm00001d032576_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d001820_P001
Zm00001d006805_P001
Zm00001d008871_P001
Zm00001d010783_P001
Zm00001d013937_P001
Zm00001d016570_P001
Zm00001d017390_P001
Zm00001d025939_P003
Zm00001d028871_P001
Zm00001d032576_P001
Zm00001d036342_P001
Zm00001d038803_P001
Zm00001d049553_P001
Zm00001d050563_P001
Zm00001d051288_P001
Zm00001d053677_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03630.1	Zm00001d001820_P001	AT1G03630.1	21798944
AT1G03630.1	Zm00001d013937_P001	AT1G03630.1	21798944
AT1G03630.1	Zm00001d032576_P001	AT1G03630.1	21798944
AT1G03630.1	Zm00001d016570_P001	AT1G27300.1	21798944
AT1G03630.1	Zm00001d050563_P001	AT1G27300.1	21798944
AT1G03630.1	Zm00001d008871_P001	AT3G16310.1	21798944
AT1G03630.1	Zm00001d010783_P001	AT3G16310.1	21798944
AT1G03630.1	Zm00001d038803_P001	AT3G16310.1	21798944
AT1G03630.1	Zm00001d017390_P001	AT3G60600.1	21798944
AT1G03630.1	Zm00001d025939_P003	AT3G60600.1	21798944
AT1G03630.1	Zm00001d036342_P001	AT3G60600.1	21798944
AT1G03630.1	Zm00001d049553_P001	AT3G60600.1	21798944
AT1G03630.1	Zm00001d051288_P001	AT3G60600.1	21798944
AT1G03630.1	Zm00001d001820_P001	AT4G27440.1	21798944
AT1G03630.1	Zm00001d013937_P001	AT4G27440.1	21798944
AT1G03630.1	Zm00001d032576_P001	AT4G27440.1	21798944
AT1G03630.1	Zm00001d006805_P001	AT5G11980.1	21798944
AT1G03630.1	Zm00001d028871_P001	AT5G11980.1	21798944
AT1G03630.1	Zm00001d053677_P001	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94008	Sorghum	plastid	96.21	96.7
Zm00001d013937_P001	Maize	plastid	95.45	95.45
Os10t0496900-02	Rice	plastid	90.91	89.55
HORVU1Hr1G044680.1	Barley	plastid	88.38	88.61
TraesCS1B01G186300.1	Wheat	plastid	88.13	88.35
TraesCS1D01G168700.2	Wheat	plastid	88.38	83.93
TraesCS1A01G171000.1	Wheat	golgi, plastid	87.88	83.45
GSMUA_Achr11P...	Banana	plastid	79.29	79.29
CDX89249	Canola	plastid	79.04	78.84
CDY29311	Canola	plastid	78.79	78.59
Bra026349.1-P	Field mustard	plastid	76.77	78.35
VIT_12s0059g00270.t01	Wine grape	plastid	78.79	78.2
AT4G27440.1	Thale cress	plastid	78.79	77.81
Bra019049.1-P	Field mustard	plastid	78.03	77.64
VIT_19s0014g03160.t01	Wine grape	plastid	77.53	77.53
Solyc10g006900.2.1	Tomato	plastid	77.02	77.22
PGSC0003DMT400064369	Potato	plastid	77.02	76.63
KRH55334	Soybean	plastid	76.77	76.19
Solyc12g013710.1.1	Tomato	extracellular, nucleus, plastid	76.26	76.07
AT1G03630.1	Thale cress	plastid	77.02	76.06
KRH27209	Soybean	nucleus, plastid	76.52	75.94
PGSC0003DMT400039734	Potato	plastid	76.01	75.82
AT5G54190.1	Thale cress	plastid	77.53	75.8
Bra033415.1-P	Field mustard	plastid	76.26	75.5
CDY15470	Canola	plastid	75.76	75.38
CDY51384	Canola	plastid	75.76	75.38
Bra030540.1-P	Field mustard	plastid	75.76	75.38
CDY18175	Canola	plastid	76.01	75.25
CDX89877	Canola	plastid	76.01	75.25
Bra003004.1-P	Field mustard	plastid	76.26	74.94
CDY14325	Canola	plastid	76.26	74.75
KRH26074	Soybean	plastid	64.39	74.56
PGSC0003DMT400047264	Potato	plastid	73.74	73.37
Solyc07g054210.2.1	Tomato	plastid	73.48	72.93
Zm00001d001820_P001	Maize	plastid	71.21	72.87
CDX98171	Canola	plastid	63.38	71.92
CDY18309	Canola	plastid	63.13	71.63
CDX92832	Canola	plastid	78.54	48.82
CDY29840	Canola	plastid	78.03	48.82
Zm00001d047150_P003	Maize	plastid	25.0	31.43
Zm00001d039848_P002	Maize	cytosol, mitochondrion, plastid	23.48	29.06
Zm00001d019754_P001	Maize	mitochondrion, plastid	25.25	28.33
Zm00001d029840_P003	Maize	plastid	23.74	28.14
Zm00001d045495_P001	Maize	mitochondrion	23.23	25.48
Zm00001d027353_P001	Maize	mitochondrion	22.73	24.93
Zm00001d025129_P001	Maize	mitochondrion	14.65	24.68
Zm00001d053067_P001	Maize	plastid	22.22	23.98
Zm00001d039397_P001	Maize	cytosol	13.38	21.81
Zm00001d054039_P001	Maize	cytosol	20.45	19.47
Zm00001d014994_P001	Maize	cytosol	20.71	17.23

Protein Annotations

KEGG:00860+1.3.1.33	EntrezGene:100283531	Gene3D:3.40.50.720	MapMan:7.12.6.5.1	UniProt:B4FSE2	EMBL:BT040030
EMBL:EU965034	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0015979	GO:GO:0015995	GO:GO:0016491	GO:GO:0016630	GO:GO:0055114
InterPro:NAD(P)-bd_dom_sf	ProteinID:ONM05429.1	PFAM:PF00106	PRINTS:PR00081	PANTHER:PTHR44419	PANTHER:PTHR44419:SF2
InterPro:Prochl_reduct	InterPro:SDR_fam	SUPFAM:SSF51735	TIGRFAMs:TIGR01289	UniParc:UPI00017B8363	EnsemblPlantsGene:Zm00001d032576
EnsemblPlants:Zm00001d032576_P001	EnsemblPlants:Zm00001d032576_T001	SEG:seg	:	:	:

Description

GRMZM2G036455Protochlorophyllide reductase C chloroplastic

Coordinates

chr1:-:231120510..231123615

Molecular Weight (calculated)

42235.6 Da

IEP (calculated)

9.234

GRAVY (calculated)

-0.083

Length

396 amino acids

Sequence
(BLAST)

001: MALQAATSFL PSALSARKEG SSVKDSAFLG VHLADDGLKL ETAALGLRTK RVITSVAIRA QAAAVSSPSV TPASPSGKKT LRKGTAIITG ASSGLGLATA
101: KALAETGKWH VIMACRDFLK ASRAAKAAGM DKDSFTVVHL DLASLDSVRQ FVKNVRQLEM PVDVVVCNAA VYQPTAKEPS YTADGFEMSV GVNHLGHFLL
201: ARELLSDLQS SDYPSKRLII VGSITGNTNT LAGNVPPKAN LGDLRGLAGG LNGIGGSAMI DGGEFDGAKA YKDSKVCNML TMQEFHRRYH EETGVTFASL
301: YPGCIATTGL FREHIPLFRL LFPPFQKYIT KGYVSEEEAG KRLSQVVSDP SLTKSGVYWS WNKNSASFEN QLSEEASDAD KAKKLWEISE KLVGLA

Best Arabidopsis Sequence Match ( AT5G54190.1 )
(BLAST)

001: MALQAASLVS SAFSVRKDGK LNASASSSFK ESSLFGVSLS EQSKADFVSS SLRCKREQSL RNNKAIIRAQ AIATSTPSVT KSSLDRKKTL RKGNVVVTGA
101: SSGLGLATAK ALAETGKWHV IMACRDFLKA ERAAQSAGMP KDSYTVMHLD LASLDSVRQF VDNFRRAEMP LDVLVCNAAV YQPTANQPTF TAEGFELSVG
201: INHLGHFLLS RLLIDDLKNS DYPSKRLIIV GSITGNTNTL AGNVPPKANL GDLRGLAGGL NGLNSSAMID GGDFVGAKAY KDSKVCNMLT MQEFHRRFHE
301: DTGITFASLY PGCIATTGLF REHIPLFRTL FPPFQKYITK GYVSESEAGK RLAQVVADPS LTKSGVYWSW NKTSASFENQ LSQEASDVEK ARRVWEVSEK
401: LVGLA

Arabidopsis Description

PORAPORA [Source:UniProtKB/TrEMBL;Acc:A0A178UR02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.