CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92716
EER94008
EES02290
EES05123
EES11656
EES12559
EES14570
EES19830
KXG31128

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03630.1	EER94008	AT1G03630.1	21798944
AT1G03630.1	EES11656	AT1G03630.1	21798944
AT1G03630.1	EES05123	AT1G27300.1	21798944
AT1G03630.1	EES02290	AT3G16310.1	21798944
AT1G03630.1	EES19830	AT3G16310.1	21798944
AT1G03630.1	EES12559	AT3G60600.1	21798944
AT1G03630.1	EES14570	AT3G60600.1	21798944
AT1G03630.1	KXG31128	AT3G60600.1	21798944
AT1G03630.1	EER94008	AT4G27440.1	21798944
AT1G03630.1	EES11656	AT4G27440.1	21798944
AT1G03630.1	EER92716	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013937_P001	Maize	plastid	97.46	96.97
Zm00001d032576_P001	Maize	plastid	96.7	96.21
Os10t0496900-02	Rice	plastid	92.13	90.3
HORVU1Hr1G044680.1	Barley	plastid	89.59	89.37
TraesCS1B01G186300.1	Wheat	plastid	89.34	89.11
TraesCS1A01G171000.1	Wheat	golgi, plastid	89.59	84.65
TraesCS1D01G168700.2	Wheat	plastid	89.34	84.41
CDX89249	Canola	plastid	79.7	79.09
CDY29311	Canola	plastid	79.44	78.84
Bra026349.1-P	Field mustard	plastid	77.41	78.61
GSMUA_Achr11P...	Banana	plastid	78.93	78.54
AT4G27440.1	Thale cress	plastid	79.19	77.81
Bra019049.1-P	Field mustard	plastid	78.43	77.64
VIT_19s0014g03160.t01	Wine grape	plastid	77.92	77.53
VIT_12s0059g00270.t01	Wine grape	plastid	78.43	77.44
Solyc10g006900.2.1	Tomato	plastid	77.41	77.22
PGSC0003DMT400064369	Potato	plastid	77.67	76.88
Solyc12g013710.1.1	Tomato	extracellular, nucleus, plastid	77.41	76.83
KRH27209	Soybean	nucleus, plastid	77.67	76.69
PGSC0003DMT400039734	Potato	plastid	77.16	76.57
AT1G03630.1	Thale cress	plastid	77.67	76.31
Bra033415.1-P	Field mustard	plastid	76.9	75.75
KRH55334	Soybean	plastid	76.65	75.69
CDY15470	Canola	plastid	76.4	75.63
Bra030540.1-P	Field mustard	plastid	76.4	75.63
CDY51384	Canola	plastid	76.4	75.63
AT5G54190.1	Thale cress	plastid	77.67	75.56
CDX89877	Canola	plastid	76.65	75.5
CDY18175	Canola	plastid	76.65	75.5
Bra003004.1-P	Field mustard	plastid	76.9	75.19
CDY14325	Canola	plastid	76.9	75.0
EES11656	Sorghum	plastid	72.84	74.55
KRH26074	Soybean	plastid	63.96	73.68
PGSC0003DMT400047264	Potato	plastid	73.6	72.86
Solyc07g054210.2.1	Tomato	plastid	73.35	72.43
CDX98171	Canola	plastid	63.96	72.21
CDY18309	Canola	plastid	63.71	71.92
CDX92832	Canola	plastid	79.44	49.14
CDY29840	Canola	plastid	78.43	48.82
EER96376	Sorghum	mitochondrion, plastid	24.87	31.01
OQU92191	Sorghum	plastid	24.62	30.99
EER91987	Sorghum	plastid	24.37	30.67
OQU92195	Sorghum	cytosol	23.86	29.84
EES02479	Sorghum	cytosol, plastid	23.35	28.75
EER87765	Sorghum	mitochondrion	23.86	26.11
OQU93381	Sorghum	mitochondrion	22.59	25.07
EES08101	Sorghum	cytosol	22.34	23.98
EES04360	Sorghum	cytosol	20.3	18.91

Protein Annotations

KEGG:00860+1.3.1.33	Gene3D:3.40.50.720	MapMan:7.12.6.5.1	EntrezGene:8065810	UniProt:C5WXA8	EnsemblPlants:EER94008
ProteinID:EER94008	ProteinID:EER94008.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0015979	GO:GO:0015995	GO:GO:0016491	GO:GO:0016630
GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00081	PANTHER:PTHR44419	PANTHER:PTHR44419:SF2
InterPro:Prochl_reduct	InterPro:SDR_fam	EnsemblPlantsGene:SORBI_3001G206200	SUPFAM:SSF51735	unigene:Sbi.14169	TIGRFAMs:TIGR01289
UniParc:UPI0001A82864	RefSeq:XP_002467010.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:18836992..18839875

Molecular Weight (calculated)

42144.5 Da

IEP (calculated)

9.543

GRAVY (calculated)

-0.096

Length

394 amino acids

Sequence
(BLAST)

001: MALQAATSFL PSALSARKEG SVKDSAFLGV RLADGLKLET TALGLRTKRV STSVAIRAQT AAVSSPSVTP ASPSGKKTLR KGTAVITGAS SGLGLATAKA
101: LAETGKWHVI MACRDFLKAS RAAKAAGMDK DSFTIVHLDL ASLDSVRQFV KNVRQLEMPI DVVVCNAAVY QPTAKDPSYT ADGFEMSVGV NHLGHFLLAR
201: ELLSDLQSSD YPSKRLIIVG SITGNTNTLA GNVPPKANLG DLRGLAGGLN GIGSSVMIDG GEFDGAKAYK DSKVCNMLTM QEFHRRYHEE TGVTFASLYP
301: GCIATTGLFR EHIPLFRLLF PPFQKYITKG YVSEEEAGKR LAQVVSDPSL TKSGVYWSWN KNSASFENQL SEEASDSDKA KKLWEISEKL VGLA

Best Arabidopsis Sequence Match ( AT5G54190.1 )
(BLAST)

001: MALQAASLVS SAFSVRKDGK LNASASSSFK ESSLFGVSLS EQSKADFVSS SLRCKREQSL RNNKAIIRAQ AIATSTPSVT KSSLDRKKTL RKGNVVVTGA
101: SSGLGLATAK ALAETGKWHV IMACRDFLKA ERAAQSAGMP KDSYTVMHLD LASLDSVRQF VDNFRRAEMP LDVLVCNAAV YQPTANQPTF TAEGFELSVG
201: INHLGHFLLS RLLIDDLKNS DYPSKRLIIV GSITGNTNTL AGNVPPKANL GDLRGLAGGL NGLNSSAMID GGDFVGAKAY KDSKVCNMLT MQEFHRRFHE
301: DTGITFASLY PGCIATTGLF REHIPLFRTL FPPFQKYITK GYVSESEAGK RLAQVVADPS LTKSGVYWSW NKTSASFENQ LSQEASDVEK ARRVWEVSEK
401: LVGLA

Arabidopsis Description

PORAPORA [Source:UniProtKB/TrEMBL;Acc:A0A178UR02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.