CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053067_P001	Maize	plastid	91.83	91.83
TraesCS4D01G093500.1	Wheat	mitochondrion	69.48	78.95
TraesCS4A01G218300.1	Wheat	mitochondrion	69.48	78.95
TraesCS4B01G097100.1	Wheat	mitochondrion	69.21	78.64
Os11t0181700-02	Rice	cytosol, mitochondrion	71.12	78.61
Os11t0181800-01	Rice	plasma membrane	69.48	77.51
GSMUA_Achr2P08080_001	Banana	mitochondrion	65.67	74.15
HORVU4Hr1G018230.1	Barley	plastid	70.84	67.01
EER96376	Sorghum	mitochondrion, plastid	50.95	59.18
EES02479	Sorghum	cytosol, plastid	49.59	56.88
EER91987	Sorghum	plastid	47.14	55.27
OQU92191	Sorghum	plastid	46.59	54.63
OQU92195	Sorghum	cytosol	44.69	52.06
EER87765	Sorghum	mitochondrion	43.05	43.89
OQU93381	Sorghum	mitochondrion	42.23	43.66
GSMUA_Achr3P22130_001	Banana	cytosol	59.13	30.82
EES11656	Sorghum	plastid	24.52	23.38
EER94008	Sorghum	plastid	23.98	22.34
EES04360	Sorghum	cytosol	24.52	21.28

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	EntrezGene:8072772	UniProt:C5Y669	EnsemblPlants:EES08101	ProteinID:EES08101
ProteinID:EES08101.1	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006950	GO:GO:0006952
GO:GO:0008150	GO:GO:0016020	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081
PANTHER:PTHR31942	PANTHER:PTHR31942:SF36	InterPro:SDR_fam	EnsemblPlantsGene:SORBI_3005G063000	SUPFAM:SSF51735	unigene:Sbi.12503
UniParc:UPI0001A860D2	RefSeq:XP_002449113.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:6857601..6860796

Molecular Weight (calculated)

39915.3 Da

IEP (calculated)

6.583

GRAVY (calculated)

-0.149

Length

367 amino acids

Sequence
(BLAST)

001: MFEQVVSDFC WHAREVVSSA MGLWGWPWGR RGPSGFGSAS TAEEVTAGVD ASNLTAIVTG ATNGIGKETA RVLALRGAKV IIPARTLESG LKVKESLAEQ
101: VPSSKLHVME MDLSSLSSVR DFARSFDSSH QHLNLLINNA GIMACPYQLS KDGIELQFAT NHVGHFLLTS LLLDKMKSTA RETGVQGRII NVSSIAHKRS
201: DGTCFELNKL NDKDRYQPFI AYAHSKLANI LHANELSRRF QEEGCNLTAN SLHPGVIITN IIRYVAGNNS ALISVLSPVA NLFLKSVPQG AATTCYLALH
301: PNVKDVTGKY FADCNEATPT AVARDSELAK RLWSFSEELV GTNADMSQTT QASEEEDVQA KDVFQDQ

Best Arabidopsis Sequence Match ( AT5G02540.1 )
(BLAST)

001: MGLYSLITGR RGPSGFGSAS TAEEVTQGID ATNLTAIITG GTGGIGMETA RVLSKRGAHV VIGARNMGAA ENAKTEILRQ NANARVTLLQ LDLSSIKSIK
101: AFVREFHALH LPLNLLINNA GVMFCPYQLS EDGIELQFAT NHIGHFLLTN LLLDTMKNTA KTSGVEGRIL NVSSVAHIYT YQEGIQFDSI NDICSYSDKR
201: AYGQSKLANI LHANELSRQL QEEGVNITAN SVHPGLILTN LFQHTALLMR FLKFFSFYLW KNIPQGAATT CYVALHPSVK GVTGKYFADC NEVTPSKLAR
301: DETLAQKLWD FSVKLINSVS KKNYLGFDDT T

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KCF2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.