Factsheet for Zm00001d053067_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES08101	Sorghum	cytosol	91.83	91.83
TraesCS4A01G218300.1	Wheat	mitochondrion	68.66	78.02
TraesCS4B01G097100.1	Wheat	mitochondrion	68.39	77.71
TraesCS4D01G093500.1	Wheat	mitochondrion	68.39	77.71
Os11t0181700-02	Rice	cytosol, mitochondrion	68.39	75.6
Os11t0181800-01	Rice	plasma membrane	67.57	75.38
GSMUA_Achr2P08080_001	Banana	mitochondrion	64.31	72.62
HORVU4Hr1G018230.1	Barley	plastid	69.48	65.72
Zm00001d025129_P001	Maize	mitochondrion	35.42	55.32
Zm00001d039848_P002	Maize	cytosol, mitochondrion, plastid	47.96	55.0
Zm00001d047150_P003	Maize	plastid	46.05	53.65
Zm00001d019754_P001	Maize	mitochondrion, plastid	49.86	51.84
Zm00001d029840_P003	Maize	plastid	43.6	47.9
Zm00001d027353_P001	Maize	mitochondrion	43.6	44.32
Zm00001d045495_P001	Maize	mitochondrion	43.6	44.32
Zm00001d039397_P001	Maize	cytosol	28.88	43.62
GSMUA_Achr3P22130_001	Banana	cytosol	56.95	29.69
Zm00001d001820_P001	Maize	plastid	25.34	24.03
Zm00001d054039_P001	Maize	cytosol	25.34	22.36
Zm00001d032576_P001	Maize	plastid	23.98	22.22
Zm00001d013937_P001	Maize	plastid	23.98	22.22
Zm00001d014994_P001	Maize	cytosol	25.34	19.54

Protein Annotations

EMBL:BT041595	EnsemblPlants:Zm00001d053067_P001	EnsemblPlants:Zm00001d053067_T001	EnsemblPlantsGene:Zm00001d053067	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf
InterPro:SDR_fam	PANTHER:PTHR31942	PANTHER:PTHR31942:SF36	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081
ProteinID:AQK58645.1	SEG:seg	SUPFAM:SSF51735	UniParc:UPI00017B82BA	UniProt:B4FWV7	MapMan:35.1

Description

NAD(P)-binding Rossmann-fold superfamily protein

Coordinates

chr4:+:211990615..211995460

Molecular Weight (calculated)

39762.4 Da

IEP (calculated)

7.845

GRAVY (calculated)

-0.101

Length

367 amino acids

Sequence
(BLAST)

001: MFEQAVADFC WHAREVVSSG MGLWGWPWGR RGPSGFGSAS TAEEVTAGVD ASNITAIVTG ATNGIGKETA RVLALRGAKV IIPARTLESG LKLKESLADE
101: VPSSKVHVME MDLSCLSSVR DFARSFNSSH KHLNLLINNA GIMACPYQLS KDGIELQFAT NHVGHFLLTS LLLDKMKSTA AETGVQGRII NVSSVAHKRS
201: DGTCFELNKL NDKARYKPFI AYAHSKLANI LHTNELSRRF QEEGCNLTAN SLHPGVIITN IIRYVAGNSA LISALSPVAN LVLKSVPRGA ATTCYLALHP
301: NVKGVSGKYF ADCNEATPTA VARDSELAKR LWSFSEELVK IYADMSQTTQ ASEEEETTVT KDVFQDK

Best Arabidopsis Sequence Match ( AT5G02540.1 )
(BLAST)

001: MGLYSLITGR RGPSGFGSAS TAEEVTQGID ATNLTAIITG GTGGIGMETA RVLSKRGAHV VIGARNMGAA ENAKTEILRQ NANARVTLLQ LDLSSIKSIK
101: AFVREFHALH LPLNLLINNA GVMFCPYQLS EDGIELQFAT NHIGHFLLTN LLLDTMKNTA KTSGVEGRIL NVSSVAHIYT YQEGIQFDSI NDICSYSDKR
201: AYGQSKLANI LHANELSRQL QEEGVNITAN SVHPGLILTN LFQHTALLMR FLKFFSFYLW KNIPQGAATT CYVALHPSVK GVTGKYFADC NEVTPSKLAR
301: DETLAQKLWD FSVKLINSVS KKNYLGFDDT T

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KCF2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.