Factsheet for Zm00001d029840_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU92195	Sorghum	cytosol	87.72	93.02
Zm00001d047150_P003	Maize	plastid	76.35	80.95
TraesCS1B01G221200.1	Wheat	cytosol	75.15	79.68
TraesCS1A01G207500.1	Wheat	cytosol	73.95	78.41
TraesCS1D01G210800.1	Wheat	plastid	73.35	77.04
Os10t0547900-01	Rice	cytosol	70.66	75.16
Os10t0548000-02	Rice	cytosol, peroxisome, plastid	68.56	71.79
GSMUA_Achr2P18620_001	Banana	plastid	60.48	63.92
KRG91556	Soybean	cytosol	59.28	63.26
VIT_16s0050g00760.t01	Wine grape	plastid	58.68	62.62
PGSC0003DMT400040845	Potato	cytosol	57.48	61.34
PGSC0003DMT400040848	Potato	plastid	57.48	61.34
Solyc03g025370.2.1	Tomato	cytosol, nucleus, plastid	57.19	61.02
Solyc03g025410.2.1	Tomato	nucleus	56.89	60.7
VIT_02s0025g03380.t01	Wine grape	cytosol	57.19	60.63
KRH59919	Soybean	cytosol, plastid	57.19	60.63
Solyc03g025390.2.1	Tomato	cytosol	56.29	60.06
KRH41194	Soybean	cytosol, plastid	56.59	60.0
KRH08897	Soybean	cytosol, mitochondrion	56.29	59.87
PGSC0003DMT400040847	Potato	cytosol	55.69	59.42
PGSC0003DMT400032133	Potato	cytosol	55.69	59.05
CDX76338	Canola	cytosol, plastid	56.89	59.01
Bra020819.1-P	Field mustard	cytosol, plastid	56.89	59.01
Bra035220.1-P	Field mustard	cytosol	55.99	58.99
CDX86777	Canola	cytosol	55.99	58.99
CDY13264	Canola	cytosol	55.99	58.99
Solyc08g081200.2.1	Tomato	cytosol	55.39	58.73
KRH08894	Soybean	plastid	38.02	58.53
Solyc08g008060.1.1	Tomato	cytosol	55.09	58.41
PGSC0003DMT400085601	Potato	plastid	28.14	58.39
CDY10884	Canola	plastid	55.99	58.07
AT4G23430.2	Thale cress	plastid	55.99	58.07
KRH08898	Soybean	cytosol	54.79	57.91
AT4G11410.1	Thale cress	cytosol, mitochondrion	54.79	57.73
Bra013690.1-P	Field mustard	plastid	55.99	57.72
Solyc03g025400.2.1	Tomato	cytosol	54.49	57.59
PGSC0003DMT400014810	Potato	mitochondrion	42.22	57.55
KRH38432	Soybean	cytosol	54.79	57.37
KRH38419	Soybean	plastid	54.49	57.05
KRH38433	Soybean	cytosol	54.19	56.74
Zm00001d039848_P002	Maize	cytosol, mitochondrion, plastid	53.59	55.94
KRH38426	Soybean	cytosol	54.49	55.83
KRG91557	Soybean	cytosol	34.43	55.29
CDY69917	Canola	endoplasmic reticulum	50.3	55.08
KRH35271	Soybean	plastid	57.48	55.01
KRH35274	Soybean	cytosol, mitochondrion, plastid	58.98	54.87
KRH38431	Soybean	plastid	52.69	54.49
AT4G23420.3	Thale cress	plastid	54.19	54.35
Zm00001d025129_P001	Maize	mitochondrion	37.43	53.19
CDY44096	Canola	mitochondrion, plastid	56.29	52.08
Zm00001d019754_P001	Maize	mitochondrion, plastid	52.99	50.14
KRH08895	Soybean	cytosol	54.49	47.64
Zm00001d039397_P001	Maize	cytosol	33.23	45.68
Zm00001d053067_P001	Maize	plastid	47.9	43.6
Zm00001d027353_P001	Maize	mitochondrion	43.41	40.17
Zm00001d045495_P001	Maize	mitochondrion	42.22	39.06
VIT_16s0050g00750.t01	Wine grape	plastid	60.78	32.48
Zm00001d001820_P001	Maize	plastid	31.14	26.87
Zm00001d013937_P001	Maize	plastid	28.14	23.74
Zm00001d032576_P001	Maize	plastid	28.14	23.74
Zm00001d054039_P001	Maize	cytosol	29.04	23.32
Zm00001d014994_P001	Maize	cytosol	29.04	20.38

Protein Annotations

EnsemblPlants:Zm00001d029840_P003	EnsemblPlants:Zm00001d029840_T003	EnsemblPlantsGene:Zm00001d029840	EntrezGene:100192507	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf
InterPro:SDR_fam	PANTHER:PTHR24320	PANTHER:PTHR24320:SF146	PFAM:PF00106	PRINTS:PR00081	ProteinID:ONL99689.1
SEG:seg	SUPFAM:SSF51735	UniParc:UPI00084470DA	UniProt:A0A1D6K825	MapMan:35.1	:

Description

Short-chain dehydrogenase TIC 32 chloroplastic

Coordinates

chr1:+:89587618..89589865

Molecular Weight (calculated)

35946.4 Da

IEP (calculated)

9.287

GRAVY (calculated)

0.154

Length

334 amino acids

Sequence
(BLAST)

001: MRWFYRKGSS GFSSASTAED VTAGVDGQGL VAVITGASSG IGLETARVLA LRGVHVVMAV RNVSAGLKAR EAIVAKIPVA RIDVLELDLS SIASVRRFAS
101: NFDSLNLPLS ILINNAGVMT RSCTRSCDGL ELHFATNHIG HFLLTNLLLE NMKKTCRDSG IEGRIVNLTS SAHSITYREG ICFDKIHDPS SLNDFVAYGQ
201: SKLANILHSN ELSRILKEDG VNISANAVHP GVIMTNLFRN RTIVSGISSS LAISFIYHMS SRIGKALLNS IGRIICRTVE QGAATTCYVA MHPQVRGISG
301: KYFTNCDVAN PSSQASDAEL AKKLWQFSLQ IVSS

Best Arabidopsis Sequence Match ( AT4G11410.1 )
(BLAST)

001: MWPFWWKGAS GFSARSTAEE VTHGIDGTGL TAIVTGASSG IGEETTRVLA LRGVHVVMAV RNTDSGNQVR DKILKEIPQA KIDVMKLDLS SMASVRSFAS
101: EYQSLDLPLN LLINNAGIMA CPFLLSSDNI ELQFATNHLG HFLLTNLLLE RMKKTASESN REGRIVIVSS EGHRFAYREG VQFDKINDEA RYNTLQAYGQ
201: SKLGNILHAT ELARLFKEQG VNITANSLHP GSIMTNLLRY HSFINTIGNA VGKYVLKSIP QGAATTCYAA LHPQAKGVSG EYLMDNNISD PNSQGKDKDL
301: AKKLWEFSLR LTGEEES

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LDY7]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.