Factsheet for Os10t0548000-02

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
peroxisome 3
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0547900-01	Rice	cytosol	80.56	81.85
OQU92195	Sorghum	cytosol	72.41	73.33
TraesCS1A01G207500.1	Wheat	cytosol	71.79	72.7
TraesCS1B01G221200.1	Wheat	cytosol	71.79	72.7
TraesCS1D01G210800.1	Wheat	plastid	71.47	71.7
EER91987	Sorghum	plastid	70.22	71.57
Zm00001d047150_P003	Maize	plastid	70.53	71.43
OQU92191	Sorghum	plastid	68.03	69.33
Zm00001d029840_P003	Maize	plastid	71.79	68.56
GSMUA_Achr2P18620_001	Banana	plastid	63.32	63.92
KRG91556	Soybean	cytosol	60.5	61.66
VIT_02s0025g03380.t01	Wine grape	cytosol	59.56	60.32
VIT_16s0050g00760.t01	Wine grape	plastid	58.93	60.06
PGSC0003DMT400040847	Potato	cytosol	58.62	59.74
Solyc03g025390.2.1	Tomato	cytosol	57.99	59.11
PGSC0003DMT400040845	Potato	cytosol	57.99	59.11
Solyc03g025410.2.1	Tomato	nucleus	57.37	58.47
KRH41194	Soybean	cytosol, plastid	57.68	58.41
Solyc08g081200.2.1	Tomato	cytosol	57.68	58.41
Os09t0570300-01	Rice	plasma membrane	57.68	58.23
PGSC0003DMT400040848	Potato	plastid	57.05	58.15
PGSC0003DMT400032133	Potato	cytosol	57.37	58.1
KRH08897	Soybean	cytosol, mitochondrion	57.05	57.96
AT4G11410.1	Thale cress	cytosol, mitochondrion	57.37	57.73
Solyc03g025370.2.1	Tomato	cytosol, nucleus, plastid	56.43	57.51
KRH59919	Soybean	cytosol, plastid	56.74	57.46
KRH08898	Soybean	cytosol	56.74	57.28
KRH08894	Soybean	plastid	38.87	57.14
CDY10884	Canola	plastid	57.37	56.83
KRH38419	Soybean	plastid	56.43	56.43
Solyc03g025400.2.1	Tomato	cytosol	55.8	56.33
PGSC0003DMT400014810	Potato	mitochondrion	43.26	56.33
Bra013690.1-P	Field mustard	plastid	57.05	56.17
Bra035220.1-P	Field mustard	cytosol	55.8	56.15
CDY13264	Canola	cytosol	55.8	56.15
CDX86777	Canola	cytosol	55.8	56.15
KRH38432	Soybean	cytosol	56.11	56.11
PGSC0003DMT400085601	Potato	plastid	28.21	55.9
AT4G23430.2	Thale cress	plastid	56.11	55.59
KRH38433	Soybean	cytosol	55.49	55.49
KRG91557	Soybean	cytosol	36.05	55.29
CDX76338	Canola	cytosol, plastid	55.49	54.97
Bra020819.1-P	Field mustard	cytosol, plastid	55.49	54.97
Solyc08g008060.1.1	Tomato	cytosol	54.23	54.92
Os04t0291100-01	Rice	mitochondrion	53.92	54.78
KRH38426	Soybean	cytosol	55.8	54.6
KRH35271	Soybean	plastid	58.62	53.58
KRH38431	Soybean	plastid	54.23	53.56
AT4G23420.3	Thale cress	plastid	55.8	53.45
Os01t0151700-01	Rice	cytosol	52.66	52.34
CDY69917	Canola	endoplasmic reticulum	49.84	52.13
KRH35274	Soybean	cytosol, mitochondrion, plastid	58.62	52.09
Os11t0181800-01	Rice	plasma membrane	52.98	51.37
CDY44096	Canola	mitochondrion, plastid	57.37	50.69
Os11t0181700-02	Rice	cytosol, mitochondrion	52.04	50.0
KRH08895	Soybean	cytosol	56.43	47.12
Os03t0115700-01	Rice	mitochondrion	46.08	44.28
Os06t0129100-01	Rice	mitochondrion	47.02	42.49
VIT_16s0050g00750.t01	Wine grape	plastid	62.38	31.84
Os04t0678700-01	Rice	plastid	30.72	25.32
Os10t0496900-02	Rice	plastid	30.41	24.13
Os02t0116500-01	Rice	cytosol	30.09	24.0

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	EntrezGene:4349296	ProteinID:AAK43508.1	ProteinID:AAP54900.1	ProteinID:ABB47957.1
ProteinID:ABB47958.2	ProteinID:ABG66236.1	ProteinID:ABG66237.1	EMBL:AK068549	ProteinID:BAF27137.1	ProteinID:BAT11918.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114
InterPro:NAD(P)-bd_dom_sf	EnsemblPlantsGene:Os10g0548000	EnsemblPlants:Os10t0548000-02	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081
PANTHER:PTHR24320	PANTHER:PTHR24320:SF146	UniProt:Q94LU0	InterPro:SDR_fam	SUPFAM:SSF51735	UniParc:UPI00000A6C9D
RefSeq:XP_015614677.1	RefSeq:XP_015614678.1	RefSeq:XP_015614679.1	RefSeq:XP_015614680.1	RefSeq:XP_015614681.1	SEG:seg

Description

Hypothetical conserved gene. (Os10t0548000-01);Similar to Short-chain dehydrogenase Tic32. (Os10t0548000-02)

Coordinates

chr10:-:21440286..21443621

Molecular Weight (calculated)

34172.0 Da

IEP (calculated)

8.493

GRAVY (calculated)

0.135

Length

319 amino acids

Sequence
(BLAST)

001: MWFFNFNRNG PSGFSGASTA EEVTAGVDAR GLAAVVTGAS SGIGLETTRV LALRGVRVVM AVRNVAAGHK AREAIRAEIH GAIVHVLEMD LSSMDSVRRF
101: ASEFDSLNLP LNILINNAGI LSKDCIRSID GLELHFATNH IGHFLLTNLL LENMKSTSRT TGVEGRIINV SSSGHILTYP EGICFDSVKD LSRFSTYIAY
201: GQSKLANILH STELARILKG DGVNISANAI HPGFVGTNLF KNWTMANAVV NTIGRIVCKT VEQGAATTCY VALHPQVTGI SGKYFSNCNL ETPSSQASNA
301: ELAKKLWEFS SNIVSAAKL

Best Arabidopsis Sequence Match ( AT4G23430.2 )
(BLAST)

001: MWFFGSKGAS GFSSRSTAEE VTHGVDGTGL TAIVTGASSG IGVETARVLS LRGVHVVMAV RNTDSGAKVK EDIVKQVPGA KLDVMELDLS SMQSVRKFAS
101: EYKSTGLPLN LLINNAGIMA CPFMLSKDNI ELQFATNHLG HFLLTKLLLD TMKSTSRESK REGRIVNLSS EAHRFSYPEG VRFDKINDKS SYSSMRAYGQ
201: SKLCNVLHAN ELTKQLKEDG VNITANSLHP GAIMTNLGRY FNPYLAVAVG AVAKYILKSV PQGAATTCYV ALNPQVAGVS GEYFQDSNIA KPLPLVKDTE
301: LAKKVWDFST KLTDSQSGES SS

Arabidopsis Description

TIC32Short-chain dehydrogenase TIC 32, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A2RVM0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.