Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 3
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G093500.1 | Wheat | mitochondrion | 77.2 | 78.64 |
| TraesCS4B01G097100.1 | Wheat | mitochondrion | 76.6 | 78.02 |
| TraesCS4A01G218300.1 | Wheat | mitochondrion | 76.29 | 77.71 |
| Os11t0181700-02 | Rice | cytosol, mitochondrion | 73.56 | 72.89 |
| GSMUA_Achr2P08080_001 | Banana | mitochondrion | 71.73 | 72.62 |
| EES08101 | Sorghum | cytosol | 77.51 | 69.48 |
| Zm00001d053067_P001 | Maize | plastid | 75.38 | 67.57 |
| HORVU4Hr1G018230.1 | Barley | plastid | 77.81 | 65.98 |
| Os01t0151700-01 | Rice | cytosol | 55.62 | 57.01 |
| Os09t0570300-01 | Rice | plasma membrane | 54.41 | 56.65 |
| Os10t0547900-01 | Rice | cytosol | 51.37 | 53.82 |
| Os10t0548000-02 | Rice | cytosol, peroxisome, plastid | 51.37 | 52.98 |
| Os04t0291100-01 | Rice | mitochondrion | 47.72 | 50.0 |
| Os03t0115700-01 | Rice | mitochondrion | 44.98 | 44.58 |
| Os06t0129100-01 | Rice | mitochondrion | 46.81 | 43.63 |
| GSMUA_Achr3P22130_001 | Banana | cytosol | 64.74 | 30.26 |
| Os04t0678700-01 | Rice | plastid | 31.0 | 26.36 |
| Os02t0116500-01 | Rice | cytosol | 29.48 | 24.25 |
| Os10t0496900-02 | Rice | plastid | 28.88 | 23.63 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:35.1 | EntrezGene:4349945 | ProteinID:AAX96188.1 | ProteinID:ABA91797.1 | EMBL:AK071972 |
| ProteinID:BAF27747.1 | ProteinID:BAT12952.1 | ProteinID:EEE51760.1 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 | GO:GO:0016020 | InterPro:NAD(P)-bd_dom_sf | EnsemblPlantsGene:Os11g0181800 |
| EnsemblPlants:Os11t0181800-01 | PFAM:PF00106 | PRINTS:PR00081 | PANTHER:PTHR31942 | PANTHER:PTHR31942:SF36 | UniProt:Q53ML7 |
| InterPro:SDR_fam | SUPFAM:SSF51735 | UniParc:UPI0000509400 | RefSeq:XP_015615129.1 | : | : |
Description
Similar to Short-chain dehydrogenase Tic32. (Os11t0181800-01)
Coordinates
chr11:+:4097620..4101455
Molecular Weight (calculated)
35614.7 Da
IEP (calculated)
9.006
GRAVY (calculated)
-0.167
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFSWGWLCG RRNGPSGFGG ASTADEVTAG VDASRLTVVV TGATNGIGKE TARVLALRGA EVILPARTLE SGMKVKQSLA EEIPSSKLHV MEMDLSSLDS
101: VRSFAKSFNS SYRHLNVLIN NAGVMSCPFG LSKDGIELQF ATNHVGHFLL TNLLLDKMKA TAKETGLQGR IINVSSISHR GSDGSCFDLD KLNDKSKYRP
201: FKAYGHSKLA NILHANELSR RFQEEGCNLT ANSLHPGVIA TNLPRHILTN SLIISIFSVM KPFLKSIPQG AATNCYLALH PGLKDVSGKY FADCNEATPT
301: AVARDAELAK KLWEFSEELT SGDQKLKEK
101: VRSFAKSFNS SYRHLNVLIN NAGVMSCPFG LSKDGIELQF ATNHVGHFLL TNLLLDKMKA TAKETGLQGR IINVSSISHR GSDGSCFDLD KLNDKSKYRP
201: FKAYGHSKLA NILHANELSR RFQEEGCNLT ANSLHPGVIA TNLPRHILTN SLIISIFSVM KPFLKSIPQG AATNCYLALH PGLKDVSGKY FADCNEATPT
301: AVARDAELAK KLWEFSEELT SGDQKLKEK
001: MWFFGSKGAS GFSSRSTAEE VTHGVDGTGL TAIVTGASSG IGVETARVLA LRGVHVVMAV RNTGAGAKVK EDIVKQVPGA KVDVMELELS SMESVRKFAS
101: EYKSAGLPLN LLINNAGIMA CPFMLSKDNI ELQFATNHLG HFLLTKLLLD TMKNTSRESK REGRIVNVSS EAHRYSYPEG VRFDKINDES SYSSIRAYGQ
201: SKLCNVLHAN ELAKQLKEDG VNITANSLHP GAIMTNLWGY FNSYLAGAVG AVAKYMVKSV PQGAATTCYV ALNPQVAGVT GEYFSDSNIA KPIELVKDTE
301: LAKKLWDFST KLTDSQ
101: EYKSAGLPLN LLINNAGIMA CPFMLSKDNI ELQFATNHLG HFLLTKLLLD TMKNTSRESK REGRIVNVSS EAHRYSYPEG VRFDKINDES SYSSIRAYGQ
201: SKLCNVLHAN ELAKQLKEDG VNITANSLHP GAIMTNLWGY FNSYLAGAVG AVAKYMVKSV PQGAATTCYV ALNPQVAGVT GEYFSDSNIA KPIELVKDTE
301: LAKKLWDFST KLTDSQ
Arabidopsis Description
NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JNJ2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.