Factsheet for Os06t0129100-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0509200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24050.1	Os04t0509200-01	AT1G20770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045495_P001	Maize	mitochondrion	81.87	80.06
EER87765	Sorghum	mitochondrion	81.3	79.72
HORVU7Hr1G011180.12	Barley	plastid	76.77	75.49
TraesCS7A01G061000.1	Wheat	mitochondrion, plastid	75.35	74.93
TraesCS7D01G055800.1	Wheat	mitochondrion, plastid	76.2	74.31
TraesCS4A01G428800.1	Wheat	mitochondrion, plastid	74.79	73.54
Os03t0115700-01	Rice	mitochondrion	67.42	71.69
GSMUA_Achr8P11870_001	Banana	cytosol	67.99	70.59
VIT_02s0025g02190.t01	Wine grape	cytosol	64.87	68.15
CDY53896	Canola	plastid	38.24	67.5
KRH41377	Soybean	cytosol	64.31	67.36
PGSC0003DMT400031933	Potato	cytosol	63.46	66.47
Solyc08g082870.2.1	Tomato	cytosol	62.89	65.88
AT4G24050.1	Thale cress	cytosol	60.91	64.76
GSMUA_Achr11P...	Banana	cytosol	63.17	64.64
Bra019248.1-P	Field mustard	cytosol	60.62	64.46
AT1G64590.1	Thale cress	plastid	60.62	64.07
Bra013757.1-P	Field mustard	cytosol	59.77	63.55
CDY72311	Canola	cytosol	36.26	63.37
CDY10985	Canola	cytosol	59.21	62.95
CDX76323	Canola	cytosol	59.21	62.95
Bra027706.1-P	Field mustard	plastid	61.47	62.72
CDY72089	Canola	cytosol	35.69	62.69
CDY53433	Canola	plastid	61.19	62.07
CDY50440	Canola	mitochondrion	58.92	61.36
Bra027725.1-P	Field mustard	plastid	61.47	61.3
Os01t0151700-01	Rice	cytosol	44.48	48.91
Os09t0570300-01	Rice	plasma membrane	43.63	48.73
Os10t0547900-01	Rice	cytosol	42.78	48.09
Os10t0548000-02	Rice	cytosol, peroxisome, plastid	42.49	47.02
Os11t0181800-01	Rice	plasma membrane	43.63	46.81
Os04t0291100-01	Rice	mitochondrion	39.94	44.9
Os11t0181700-02	Rice	cytosol, mitochondrion	42.21	44.88
Os02t0116500-01	Rice	cytosol	28.05	24.75
CDY47833	Canola	cytosol, nucleus, plastid	61.76	24.47
CDY08387	Canola	cytosol, nucleus, plastid	61.47	24.35
Os04t0678700-01	Rice	plastid	24.93	22.74
Os10t0496900-02	Rice	plastid	25.78	22.64
Bra027724.1-P	Field mustard	cytosol, plastid	0.57	0.37

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	EntrezGene:4339991	ProteinID:BAD44789.1	ProteinID:BAS95957.1	ProteinID:EAZ35691.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114
InterPro:NAD(P)-bd_dom_sf	EnsemblPlantsGene:Os06g0129100	EnsemblPlants:Os06t0129100-01	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081
PANTHER:PTHR24320	PANTHER:PTHR24320:SF147	UniProt:Q658H8	InterPro:SDR_fam	SUPFAM:SSF51735	UniParc:UPI000043A0B9
RefSeq:XP_015641326.1	SEG:seg	:	:	:	:

Description

Short-chain dehydrogenase/reductase SDR family protein. (Os06t0129100-01)

Coordinates

chr6:+:1539031..1542210

Molecular Weight (calculated)

37429.9 Da

IEP (calculated)

9.397

GRAVY (calculated)

0.122

Length

353 amino acids

Sequence
(BLAST)

001: MLTSLRYLAG TAGASGFGSR ATAEDATAAC SDLRHITAII TGATSGIGAE TARVLAKRGA RLVLPARSLK AAAEARARLL AECPAAAGDV VVMPLDLSSL
101: ASVRRFAARF LALGLPLNLL INNAGKFADR FALSDDGVEM TFATNYLGHF LLTKLLMEKM AETAAATGVE GRIVNVSSTI HSWFAGDDAV GYIDAVTRRK
201: IPYDPTRAYA LSKLANVLHT RALADRLKEM KANVTANCVH PGIVRTRLIR ERDGLVTNTV FFLASKLLKT IPQAAATTCY VAVHPAVAGV SGKYFADCNE
301: ASPSRLGSNA DEAAKLWRFS DEVAAEEKEE SVHAGSFRLQ VQSSNADRGL AFA

Best Arabidopsis Sequence Match ( AT4G24050.1 )
(BLAST)

001: MIETGKYLLG AAGASGFGSK STAEEVTENC DLRSITAVIT GATSGIGAET ARVLAKRGAR LIFPARNVKA AEEAKERIVS EFPETEIVVM KLDLSSIASV
101: RNFVADFESL DLPLNLLINN AGKLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLNKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV RTRLTRDREG LLTDLVFFLA SKLVKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGTNSSEAT KLWAASEILV TQHSKTSFDP CS

Arabidopsis Description

AT4g24050/T19F6_40 [Source:UniProtKB/TrEMBL;Acc:O22985]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.