Factsheet for Os04t0678700-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
plastid: 21433289
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0200500-01
Os02t0509600-01
Os02t0643000-01
Os04t0534400-01
Os04t0678700-01
Os05t0520100-00
Os08t0156700-01
Os10t0496900-02
Os12t0538300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03630.1	Os04t0678700-01	AT1G03630.1	21798944
AT1G03630.1	Os10t0496900-02	AT1G03630.1	21798944
AT1G03630.1	Os02t0509600-01	AT1G27300.1	21798944
AT1G03630.1	Os01t0200500-01	AT3G16310.1	21798944
AT1G03630.1	Os05t0520100-00	AT3G16310.1	21798944
AT1G03630.1	Os02t0643000-01	AT3G60600.1	21798944
AT1G03630.1	Os04t0534400-01	AT3G60600.1	21798944
AT1G03630.1	Os08t0156700-01	AT3G60600.1	21798944
AT1G03630.1	Os04t0678700-01	AT4G27440.1	21798944
AT1G03630.1	Os10t0496900-02	AT4G27440.1	21798944
AT1G03630.1	Os12t0538300-01	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11656	Sorghum	plastid	87.08	87.53
Zm00001d001820_P001	Maize	plastid	87.08	87.08
TraesCS2B01G593000.1	Wheat	plastid	84.24	84.02
TraesCS2D01G563700.1	Wheat	cytosol	52.2	83.82
TraesCS2A01G590600.1	Wheat	plastid	83.98	83.76
TraesCS2D01G563600.1	Wheat	golgi, plastid	83.46	83.25
GSMUA_Achr3P14270_001	Banana	plastid	79.07	79.07
GSMUA_Achr7P04280_001	Banana	plastid	77.78	75.63
PGSC0003DMT400039734	Potato	plastid	75.97	74.06
Solyc12g013710.1.1	Tomato	extracellular, nucleus, plastid	75.97	74.06
HORVU4Hr1G073090.1	Barley	plastid	26.61	73.57
CDX89249	Canola	plastid	75.45	73.55
CDY29311	Canola	plastid	75.45	73.55
Bra026349.1-P	Field mustard	plastid	73.64	73.45
Solyc10g006900.2.1	Tomato	plastid	74.94	73.42
VIT_19s0014g03160.t01	Wine grape	plastid	74.94	73.23
KRH27209	Soybean	nucleus, plastid	74.94	72.68
HORVU5Hr1G104070.1	Barley	plastid	24.03	72.66
VIT_12s0059g00270.t01	Wine grape	plastid	74.68	72.43
PGSC0003DMT400064369	Potato	plastid	74.42	72.36
Bra019049.1-P	Field mustard	plastid	74.42	72.36
Bra003004.1-P	Field mustard	plastid	74.42	71.46
Os10t0496900-02	Rice	plastid	74.16	71.39
AT5G54190.1	Thale cress	plastid	74.68	71.36
CDY14325	Canola	plastid	74.42	71.29
AT4G27440.1	Thale cress	plastid	73.64	71.07
KRH55334	Soybean	plastid	72.87	70.68
HORVU2Hr1G006120.3	Barley	plastid	22.22	70.49
PGSC0003DMT400047264	Potato	plastid	72.35	70.35
Solyc07g054210.2.1	Tomato	plastid	72.09	69.92
CDY51384	Canola	plastid	71.58	69.6
CDX89877	Canola	plastid	71.83	69.5
Bra033415.1-P	Field mustard	plastid	71.58	69.25
CDY18175	Canola	plastid	71.58	69.25
CDY15470	Canola	plastid	71.06	69.1
Bra030540.1-P	Field mustard	plastid	70.8	68.84
AT1G03630.1	Thale cress	plastid	71.32	68.83
CDX98171	Canola	plastid	62.02	68.77
CDY18309	Canola	plastid	61.76	68.48
KRH26074	Soybean	plastid	59.17	66.96
HORVU2Hr1G020490.1	Barley	plastid	27.65	66.05
HORVU2Hr1G119050.2	Barley	mitochondrion	60.72	62.67
CDX92832	Canola	plastid	74.42	45.21
CDY29840	Canola	plastid	73.9	45.18
Os09t0570300-01	Rice	plasma membrane	28.17	34.49
Os10t0547900-01	Rice	cytosol	26.61	32.8
Os01t0151700-01	Rice	cytosol	25.84	31.15
Os11t0181800-01	Rice	plasma membrane	26.36	31.0
Os10t0548000-02	Rice	cytosol, peroxisome, plastid	25.32	30.72
Os04t0291100-01	Rice	mitochondrion	24.55	30.25
Os11t0181700-02	Rice	cytosol, mitochondrion	24.81	28.92
Os03t0115700-01	Rice	mitochondrion	23.0	26.81
Os06t0129100-01	Rice	mitochondrion	22.74	24.93
Os02t0116500-01	Rice	cytosol	23.51	22.75

Protein Annotations

KEGG:00860+1.3.1.33	Gene3D:3.40.50.720	EntrezGene:4337415	MapMan:7.12.6.5.1	EMBL:AK065236	EMBL:AK103940
EMBL:AK104855	ProteinID:BAF16188.1	ProteinID:BAS91648.1	ProteinID:CAE05721.1	ProteinID:EAZ32424.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015979
GO:GO:0015995	GO:GO:0016491	GO:GO:0016630	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	EnsemblPlantsGene:Os04g0678700
EnsemblPlants:Os04t0678700-01	PFAM:PF00106	PRINTS:PR00081	PANTHER:PTHR44419	PANTHER:PTHR44419:SF2	InterPro:Prochl_reduct
UniProt:Q7XKF3	InterPro:SDR_fam	SUPFAM:SSF51735	TIGRFAMs:TIGR01289	UniParc:UPI00001B1524	RefSeq:XP_015633866.1
SEG:seg	:	:	:	:	:

Description

NADPH: protochlorophyllide oxidoreductase A, Protochlorophyllide oxidoreductase ASimilar to Protochlorophyllide reductase (EC 1.3.1.33) (PCR) (NADPH- protochlorophyllide oxidoreductase) (POR) (Fragment). (Os04t0678700-01)

Coordinates

chr4:+:34663055..34664559

Molecular Weight (calculated)

41185.8 Da

IEP (calculated)

10.192

GRAVY (calculated)

-0.033

Length

387 amino acids

Sequence
(BLAST)

001: MALQVQAALL PSALSVPKKG NLSAVVKEPG FLSVSQKAKK PSLVVRAVAT PAAPVASPGA GTSKADGKKT LRQGVVVITG ASSGLGLAAA KALAETGKWH
101: VVMACRDFLK AATAAKAAGM AAGSYTVMHL DLASLDSVRQ FVDNFRRSGM PLDALVCNAA IYRPTARQPT FTADGYEMSV GVNHLGHFLL ARLMLDDLKK
201: SDYPSRRLII LGSITGNTNT LAGNVPPKAG LGDLRGLAGG LRGQNGSAMI DGAESFDGAK AYKDSKICNM LTMQEFHRRF HEETGITFAS LYPGCIATTG
301: LFREHIPLFR LLFPPFQRFV TKGFVSEAES GKRLAQVVGD PSLTKSGVYW SWNKDSASFE NQLSQEASDP EKARKLWDLS EKLVGLV

Best Arabidopsis Sequence Match ( AT5G54190.1 )
(BLAST)

001: MALQAASLVS SAFSVRKDGK LNASASSSFK ESSLFGVSLS EQSKADFVSS SLRCKREQSL RNNKAIIRAQ AIATSTPSVT KSSLDRKKTL RKGNVVVTGA
101: SSGLGLATAK ALAETGKWHV IMACRDFLKA ERAAQSAGMP KDSYTVMHLD LASLDSVRQF VDNFRRAEMP LDVLVCNAAV YQPTANQPTF TAEGFELSVG
201: INHLGHFLLS RLLIDDLKNS DYPSKRLIIV GSITGNTNTL AGNVPPKANL GDLRGLAGGL NGLNSSAMID GGDFVGAKAY KDSKVCNMLT MQEFHRRFHE
301: DTGITFASLY PGCIATTGLF REHIPLFRTL FPPFQKYITK GYVSESEAGK RLAQVVADPS LTKSGVYWSW NKTSASFENQ LSQEASDVEK ARRVWEVSEK
401: LVGLA

Arabidopsis Description

PORAPORA [Source:UniProtKB/TrEMBL;Acc:A0A178UR02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.