CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92716
EER94008
EES02290
EES05123
EES11656
EES12559
EES14570
EES19830
KXG31128

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03630.1	EER94008	AT1G03630.1	21798944
AT1G03630.1	EES11656	AT1G03630.1	21798944
AT1G03630.1	EES05123	AT1G27300.1	21798944
AT1G03630.1	EES02290	AT3G16310.1	21798944
AT1G03630.1	EES19830	AT3G16310.1	21798944
AT1G03630.1	EES12559	AT3G60600.1	21798944
AT1G03630.1	EES14570	AT3G60600.1	21798944
AT1G03630.1	KXG31128	AT3G60600.1	21798944
AT1G03630.1	EER94008	AT4G27440.1	21798944
AT1G03630.1	EES11656	AT4G27440.1	21798944
AT1G03630.1	EER92716	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d001820_P001	Maize	plastid	95.32	94.83
Os04t0678700-01	Rice	plastid	87.53	87.08
TraesCS2D01G563700.1	Wheat	cytosol	53.51	85.48
TraesCS2D01G563600.1	Wheat	golgi, plastid	85.19	84.54
TraesCS2A01G590600.1	Wheat	plastid	85.19	84.54
TraesCS2B01G593000.1	Wheat	plastid	84.94	84.28
GSMUA_Achr3P14270_001	Banana	plastid	78.18	77.78
GSMUA_Achr7P04280_001	Banana	plastid	77.66	75.13
PGSC0003DMT400039734	Potato	plastid	75.58	73.3
Solyc12g013710.1.1	Tomato	extracellular, nucleus, plastid	75.58	73.3
EER94008	Sorghum	plastid	74.55	72.84
Solyc10g006900.2.1	Tomato	plastid	74.55	72.66
VIT_19s0014g03160.t01	Wine grape	plastid	74.55	72.47
VIT_12s0059g00270.t01	Wine grape	plastid	74.55	71.93
CDX89249	Canola	plastid	74.03	71.79
CDY29311	Canola	plastid	74.03	71.79
KRH27209	Soybean	nucleus, plastid	74.29	71.68
KRH55334	Soybean	plastid	74.29	71.68
PGSC0003DMT400064369	Potato	plastid	74.03	71.61
Bra026349.1-P	Field mustard	plastid	71.69	71.13
HORVU5Hr1G104070.1	Barley	plastid	23.64	71.09
Bra019049.1-P	Field mustard	plastid	73.25	70.85
HORVU4Hr1G073090.1	Barley	plastid	25.71	70.71
Bra030540.1-P	Field mustard	plastid	72.47	70.1
CDY51384	Canola	plastid	72.21	69.85
CDY15470	Canola	plastid	72.21	69.85
CDX89877	Canola	plastid	72.47	69.75
HORVU2Hr1G006120.3	Barley	plastid	22.08	69.67
AT5G54190.1	Thale cress	plastid	73.25	69.63
Bra033415.1-P	Field mustard	plastid	72.21	69.5
Bra003004.1-P	Field mustard	plastid	72.73	69.48
AT4G27440.1	Thale cress	plastid	72.21	69.33
AT1G03630.1	Thale cress	plastid	72.21	69.33
CDY14325	Canola	plastid	72.73	69.31
CDY18175	Canola	plastid	71.95	69.25
PGSC0003DMT400047264	Potato	plastid	71.17	68.84
Solyc07g054210.2.1	Tomato	plastid	71.17	68.67
CDX98171	Canola	plastid	61.04	67.34
CDY18309	Canola	plastid	60.78	67.05
KRH26074	Soybean	plastid	59.22	66.67
HORVU2Hr1G020490.1	Barley	plastid	27.53	65.43
HORVU2Hr1G119050.2	Barley	mitochondrion	60.0	61.6
CDY29840	Canola	plastid	72.73	44.23
CDX92832	Canola	plastid	72.47	43.8
EER96376	Sorghum	mitochondrion, plastid	28.31	34.49
OQU92195	Sorghum	cytosol	26.49	32.38
EER91987	Sorghum	plastid	25.97	31.95
OQU92191	Sorghum	plastid	25.71	31.63
EES02479	Sorghum	cytosol, plastid	26.23	31.56
EER87765	Sorghum	mitochondrion	23.9	25.56
EES08101	Sorghum	cytosol	23.38	24.52
OQU93381	Sorghum	mitochondrion	22.6	24.51
EES04360	Sorghum	cytosol	23.64	21.51

Protein Annotations

KEGG:00860+1.3.1.33	Gene3D:3.40.50.720	MapMan:7.12.6.5.1	EntrezGene:8076468	UniProt:C5YAK0	EnsemblPlants:EES11656
ProteinID:EES11656	ProteinID:EES11656.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0015979	GO:GO:0015995	GO:GO:0016491	GO:GO:0016630
GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00081	PANTHER:PTHR44419	PANTHER:PTHR44419:SF2
InterPro:Prochl_reduct	InterPro:SDR_fam	EnsemblPlantsGene:SORBI_3006G268200	SUPFAM:SSF51735	unigene:Sbi.1392	TIGRFAMs:TIGR01289
UniParc:UPI0001A87320	RefSeq:XP_002447328.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:60117610..60119308

Molecular Weight (calculated)

41140.6 Da

IEP (calculated)

10.012

GRAVY (calculated)

-0.082

Length

385 amino acids

Sequence
(BLAST)

001: MALQAALLPS TLSVPKKGSL AAAVKDTAFL SVPQKKLQAA SLSVRTQVAT APVATPGSST ATKDGKKTVR QGVVVITGAS SGLGLAAAKA LAETGKWHVV
101: MACRDFLKTA KAAKGAGMAD GSYTIMHLDL ASLDSVRQFV DNFRRAGMPL DSLVCNAAIY RPTARTPTFT ADGYEMSVGV NHLGHFLLAR LLLDDLQRSD
201: YPSRRLIILG SITGNTNTLA GNIPPKAGLG DLRGLAGGLR GQNGSAMIDG SESFDGAKAY KDSKICNMLT MQELHRRYHE DTGITFASLY PGCIATTGLF
301: REHIPLFRLL FPPFQKFITK GFVSEAESGK RLAQVVSDPS LTKSGVYWSW NKDSASFENQ LSQEASDPEK ARKLWEISEK LVGLA

Best Arabidopsis Sequence Match ( AT5G54190.1 )
(BLAST)

001: MALQAASLVS SAFSVRKDGK LNASASSSFK ESSLFGVSLS EQSKADFVSS SLRCKREQSL RNNKAIIRAQ AIATSTPSVT KSSLDRKKTL RKGNVVVTGA
101: SSGLGLATAK ALAETGKWHV IMACRDFLKA ERAAQSAGMP KDSYTVMHLD LASLDSVRQF VDNFRRAEMP LDVLVCNAAV YQPTANQPTF TAEGFELSVG
201: INHLGHFLLS RLLIDDLKNS DYPSKRLIIV GSITGNTNTL AGNVPPKANL GDLRGLAGGL NGLNSSAMID GGDFVGAKAY KDSKVCNMLT MQEFHRRFHE
301: DTGITFASLY PGCIATTGLF REHIPLFRTL FPPFQKYITK GYVSESEAGK RLAQVVADPS LTKSGVYWSW NKTSASFENQ LSQEASDVEK ARRVWEVSEK
401: LVGLA

Arabidopsis Description

PORAPORA [Source:UniProtKB/TrEMBL;Acc:A0A178UR02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.