CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87801
EER88586
EER90798
EER91363
EER92238
EER92848
EER93257
EER93600
EER94430
EER94469
EER94630
EER95642
EER96079
EER98394
EER98395
EER99221
EER99823
EES03400
EES04336
EES09846
EES11282
EES11733
EES14557
EES15044
EES18686
KXG31702
KXG34939
KXG36347
KXG38150
OQU75652
OQU81217

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16310.1	EER92848	AT1G04340.1	21798944
AT3G16310.1	OQU81217	AT1G04340.1	21798944
AT3G16310.1	EER88586	AT1G14360.1	21798944
AT3G16310.1	EES03400	AT1G17080.1	21798944
AT3G16310.1	EES18686	AT1G17080.1	21798944
AT3G16310.1	KXG31702	AT1G17080.1	21798944
AT3G16310.1	KXG34939	AT1G28250.1	21798944
AT3G16310.1	EER96079	AT1G55535.1	21798944
AT3G16310.1	EER87801	AT1G62880.1	21798944
AT3G16310.1	EER94630	AT1G63120.1	21798944
AT3G16310.1	EER95642	AT1G63120.1	21798944
AT3G16310.1	EER99221	AT1G63120.1	21798944
AT3G16310.1	EES11282	AT1G63120.1	21798944
AT3G16310.1	EES15044	AT2G02990.1	21798944
AT3G16310.1	OQU75652	AT2G14835.2	21798944
AT3G16310.1	EER94430	AT2G23910.1	21798944
AT3G16310.1	EER98394	AT2G32380.1	21798944
AT3G16310.1	EER98395	AT2G32380.1	21798944
AT3G16310.1	EER90798	AT2G32580.1	21798944
AT3G16310.1	EER94469	AT2G35170.1	21798944
AT3G16310.1	EER92238	AT3G07950.1	21798944
AT3G16310.1	EER99823	AT3G07950.1	21798944
AT3G16310.1	EES11733	AT3G07950.1	21798944
AT3G16310.1	KXG36347	AT3G20510.1	21798944
AT3G16310.1	KXG38150	AT3G20510.1	21798944
AT3G16310.1	EER93600	AT4G09580.1	21798944
AT3G16310.1	EES04336	AT4G10430.1	21798944
AT3G16310.1	EES14557	AT4G10430.1	21798944
AT3G16310.1	EER93257	AT4G34640.1	21798944
AT3G16310.1	EER92848	AT5G43460.1	21798944
AT3G16310.1	OQU81217	AT5G43460.1	21798944
AT3G16310.1	EES09846	AT5G51010.1	21798944
AT3G16310.1	EER91363	AT5G53560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008871_P001	Maize	mitochondrion	92.86	92.86
Os01t0200500-01	Rice	nucleus	83.54	82.26
TraesCS3A01G313000.1	Wheat	nucleus	80.43	80.94
TraesCS3B01G158900.1	Wheat	nucleus	80.12	80.62
TraesCS3D01G141300.1	Wheat	nucleus	79.5	80.5
HORVU3Hr1G026980.2	Barley	nucleus, plastid	77.64	80.39
GSMUA_Achr6P14800_001	Banana	plastid	38.51	54.87
VIT_09s0002g03770.t01	Wine grape	mitochondrion, plastid	45.65	46.37
KRH23409	Soybean	mitochondrion	45.34	44.11
KRH09922	Soybean	endoplasmic reticulum, nucleus	44.41	43.2
PGSC0003DMT400006495	Potato	mitochondrion, plastid	44.41	42.69
Bra027174.1-P	Field mustard	plastid	42.55	41.02
AT3G16310.1	Thale cress	plastid	41.61	40.73
EES19830	Sorghum	mitochondrion	34.47	34.05
CDY30157	Canola	plastid	42.86	32.55
Solyc03g120880.2.1	Tomato	nucleus	44.41	28.49
CDX97739	Canola	plastid	41.93	20.24

Protein Annotations

MapMan:23.5.1.1.6.5	Gene3D:3.30.70.330	EntrezGene:8080518	UniProt:C5XLT1	EnsemblPlants:EES02290	ProteinID:EES02290
ProteinID:EES02290.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003697	GO:GO:0005215
GO:GO:0005487	GO:GO:0005488	GO:GO:0005543	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0006139	GO:GO:0006355	GO:GO:0006607
GO:GO:0006810	GO:GO:0006913	GO:GO:0006999	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289
GO:GO:0009058	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0031965
GO:GO:0044613	GO:GO:0044615	GO:GO:0051028	InterPro:IPR007846	InterPro:IPR012677	InterPro:Nucleoporin_NUP53
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF05172	PIRSF:PIRSF038119	PFscan:PS51472	PANTHER:PTHR21527	InterPro:RBD_domain_sf
InterPro:RRM_NUP35_dom	EnsemblPlantsGene:SORBI_3003G028100	SUPFAM:SSF54928	unigene:Sbi.6139	UniParc:UPI0001A84F04	RefSeq:XP_002457170.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:2485203..2488632

Molecular Weight (calculated)

34936.1 Da

IEP (calculated)

9.608

GRAVY (calculated)

-0.659

Length

322 amino acids

Sequence
(BLAST)

001: MSASRPDHRR HHPPFLRDLS SPISSSFRLP PASMRRETQA STPPPPPPLL SLDDLSHQSP SPHPATPPQA TATPSPQPSR GAGLFSSPMR SNGSPAPSAW
101: WTPSREEKPR EGSPMDGVVQ HQQQSPTTPS GQQSQQQKVA LITLPPPREV ARPEMPRDSA PAAGRVDEEE WVTVFGFPPG DTNMVLREFE KCGIVLRHVP
201: GPRDANWVHI LYQSRHDAQK ALAKHGQQLN IVLIIGVKPV DPWQRQYLNE NTNENYQGSA TITFTSQPVA PSGFATRNAL APLPSNSVPN GSCNESNRGA
301: SGAIASPTKS VLSKVMDLMF GL

Best Arabidopsis Sequence Match ( AT3G16310.1 )
(BLAST)

001: MSAAAHRTPK SGRQSLLFQD LASPVSARRG KFSSPGQAAA VSALWRENFG GSDLPPPPMY TLDDRSDFSP ESGIADYSAS PDAKSDRRTP FQSSGKNIVT
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV

Arabidopsis Description

NUP35Nuclear pore complex protein NUP35 [Source:UniProtKB/Swiss-Prot;Acc:O04326]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.