CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plasma membrane 4
plastid 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EES02290
EES05123
EES19830

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63120.1	EES05123	AT1G27300.1	21798944
AT5G07250.1	EES02290	AT3G16310.1	21798944
AT5G07250.1	EES19830	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002632_P001	Maize	plasma membrane	93.82	93.82
TraesCS4A01G179600.1	Wheat	plasma membrane	45.59	80.73
TraesCS2B01G419100.1	Wheat	plasma membrane	79.41	79.88
TraesCS2D01G398500.1	Wheat	plasma membrane	79.41	79.65
TraesCS2A01G401000.1	Wheat	plasma membrane	79.71	79.47
Os04t0569300-01	Rice	cytosol	78.82	78.36
VIT_02s0025g04130.t01	Wine grape	cytosol, plasma membrane, vacuole	61.76	64.02
KRH09112	Soybean	plasma membrane	60.29	62.31
EER99221	Sorghum	cytosol, peroxisome, plasma membrane	59.41	62.15
AT1G63120.1	Thale cress	cytosol, golgi, plasma membrane	57.94	62.15
VIT_16s0100g00640.t01	Wine grape	plasma membrane	58.82	61.54
KRH38564	Soybean	plasma membrane	59.71	61.52
Solyc03g026080.2.1	Tomato	plasma membrane	57.35	61.32
PGSC0003DMT400037141	Potato	cytosol, golgi, plasma membrane	57.35	61.32
PGSC0003DMT400007890	Potato	plasma membrane	59.41	61.21
CDY47350	Canola	plasma membrane	55.88	60.32
Bra027622.1-P	Field mustard	plasma membrane	55.59	60.19
CDY45976	Canola	plasma membrane	56.47	60.19
Bra026997.1-P	Field mustard	cytosol, golgi, plasma membrane	56.47	60.19
KRG91456	Soybean	cytosol, golgi, plasma membrane	58.24	60.18
Solyc08g080500.2.1	Tomato	cytosol, golgi, plasma membrane	58.82	60.06
CDY67235	Canola	plasma membrane	55.88	59.56
EER94630	Sorghum	cytosol, golgi, plasma membrane	58.53	59.4
HORVU2Hr1G095170.6	Barley	mitochondrion	64.41	59.35
KRH35359	Soybean	cytosol, golgi, plasma membrane	57.35	59.09
CDY49197	Canola	plasma membrane	55.59	58.88
AT1G12750.4	Thale cress	plasma membrane	51.76	57.33
EER95642	Sorghum	cytosol, golgi, plasma membrane	54.71	57.06
Bra005930.1-P	Field mustard	plasma membrane	53.82	56.31
AT5G07250.1	Thale cress	plasma membrane	57.06	56.07
CDX78286	Canola	plasma membrane	53.53	56.0
CDX81043	Canola	plasma membrane	53.24	55.52
CDY66606	Canola	plasma membrane	49.41	55.26
Bra019783.1-P	Field mustard	plasma membrane	49.41	55.26
CDX98992	Canola	plasma membrane	54.71	54.71
Bra009279.1-P	Field mustard	cytosol, peroxisome, plasma membrane	55.59	54.47
CDX70021	Canola	plasma membrane	55.29	54.18
AT4G23070.1	Thale cress	plasma membrane	49.71	53.99
Bra013673.1-P	Field mustard	plasma membrane	44.71	53.9
CDY53134	Canola	plasma membrane	49.71	53.82
CDX70020	Canola	mitochondrion, plasma membrane	50.88	53.4
CDY41251	Canola	plasma membrane	49.12	53.35
CDX98993	Canola	cytosol	46.76	50.0
CDY60266	Canola	plasma membrane	51.47	48.88
Bra009280.1-P	Field mustard	cytosol	51.18	46.65
OQU84103	Sorghum	golgi, peroxisome, plasma membrane, plastid	54.12	42.69
EES00318	Sorghum	golgi, peroxisome, plasma membrane	50.0	40.38

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	EntrezGene:8060403	UniProt:C5YE36	EnsemblPlants:EES11282	ProteinID:EES11282
ProteinID:EES11282.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019538	InterPro:IPR035952	PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF31	InterPro:Peptidase_S54_rhomboid
InterPro:Peptidase_S54_rhomboid_dom	InterPro:Rhomboid-like_sf	EnsemblPlantsGene:SORBI_3006G183400	SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI0001A86D2B
RefSeq:XP_002446954.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:53847066..53848985

Molecular Weight (calculated)

37108.4 Da

IEP (calculated)

9.149

GRAVY (calculated)

0.399

Length

340 amino acids

Sequence
(BLAST)

001: MSHADVEAGA PAARAAPPAT TGIKPPPGRY NTTSNAPYVQ PSPFYYDHAA AHERHHWSWL VPLVVIANVA MFVVVMFYNN CPRGGGDCVG RGFLRRFSFQ
101: PLKENPLLGP TAATLQKYGA LDWYKVVHGN QAWRLESCTW LHAGLIHLLA NMISLIFIGV RLEQQFGFWR VGLVYLVSGF GGSVLSVLFI RKGVSVGASG
201: ALFGLLGAML SELITNWSIY TNRFAAMLNL IIIAAINLAL GILPHVDNFA HIGGFATGFL LGFVLLIQPQ FGWLEQPYGS KTKSKYKAYQ IILLIAALVL
301: LAAGLAVGLV MVFRGENGND HCGWCHYLTC VPTSSWKCDN

Best Arabidopsis Sequence Match ( AT1G63120.1 )
(BLAST)

001: MANRDVERVG KKNRGANNNY FYEESSGETH WTSWLIPAIV VANLAVFIAV MFVNDCPKKI TGPNKECVAR FLGRFSFQPL KENPLFGPSS STLEKMGALE
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC

Arabidopsis Description

RBL2RHOMBOID-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN1]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.