Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 1
- mitochondrion 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026997.1-P | Field mustard | cytosol, golgi, plasma membrane | 99.37 | 99.37 |
| CDY67235 | Canola | plasma membrane | 98.43 | 98.43 |
| CDY47350 | Canola | plasma membrane | 89.97 | 91.11 |
| AT1G63120.1 | Thale cress | cytosol, golgi, plasma membrane | 90.28 | 90.85 |
| CDY49197 | Canola | plasma membrane | 89.97 | 89.41 |
| VIT_02s0025g04130.t01 | Wine grape | cytosol, plasma membrane, vacuole | 69.59 | 67.68 |
| CDY66606 | Canola | plasma membrane | 63.32 | 66.45 |
| PGSC0003DMT400007890 | Potato | plasma membrane | 66.46 | 64.24 |
| Os09t0525900-01 | Rice | plasma membrane | 64.26 | 63.47 |
| Solyc08g080500.2.1 | Tomato | cytosol, golgi, plasma membrane | 66.14 | 63.36 |
| Zm00001d021231_P002 | Maize | plasma membrane | 63.95 | 62.96 |
| TraesCS5D01G320400.1 | Wheat | plasma membrane | 63.01 | 62.81 |
| HORVU5Hr1G080690.2 | Barley | plasma membrane | 63.01 | 62.62 |
| Zm00001d052734_P002 | Maize | plasma membrane | 63.01 | 62.42 |
| TraesCS5A01G314000.1 | Wheat | plasma membrane | 63.01 | 62.42 |
| TraesCS5B01G314900.1 | Wheat | plasma membrane | 63.01 | 62.23 |
| Os10t0521900-01 | Rice | plasma membrane | 64.58 | 62.05 |
| EER99221 | Sorghum | cytosol, peroxisome, plasma membrane | 63.01 | 61.85 |
| Os08t0546700-01 | Rice | plasma membrane | 62.38 | 61.61 |
| Zm00001d006179_P002 | Maize | plasma membrane | 63.01 | 61.47 |
| Os03t0116400-01 | Rice | cytosol, peroxisome, plasma membrane | 61.44 | 60.31 |
| TraesCS1A01G188900.1 | Wheat | plasma membrane | 61.76 | 60.24 |
| TraesCS1D01G187500.1 | Wheat | plasma membrane | 60.81 | 60.06 |
| TraesCS4A01G179600.1 | Wheat | plasma membrane | 36.05 | 59.9 |
| Zm00001d029668_P001 | Maize | plasma membrane | 62.7 | 59.88 |
| Zm00001d029667_P001 | Maize | plasma membrane | 62.7 | 59.88 |
| CDX98992 | Canola | plasma membrane | 63.32 | 59.41 |
| CDY41251 | Canola | plasma membrane | 57.99 | 59.11 |
| TraesCS1B01G196600.1 | Wheat | plasma membrane | 60.19 | 58.9 |
| EER94630 | Sorghum | cytosol, golgi, plasma membrane | 61.76 | 58.81 |
| CDY53134 | Canola | plasma membrane | 57.68 | 58.6 |
| HORVU7Hr1G056630.1 | Barley | plasma membrane | 59.87 | 58.59 |
| TraesCS7A01G269900.1 | Wheat | plasma membrane | 59.25 | 58.51 |
| CDX70021 | Canola | plasma membrane | 63.32 | 58.21 |
| HORVU1Hr1G048610.3 | Barley | plasma membrane | 59.25 | 58.15 |
| TraesCS7B01G168100.1 | Wheat | plasma membrane | 59.56 | 57.93 |
| TraesCS7D01G270400.1 | Wheat | plasma membrane | 59.56 | 57.93 |
| CDY60266 | Canola | plasma membrane | 64.89 | 57.82 |
| TraesCS4B01G356600.1 | Wheat | plasma membrane | 60.5 | 57.78 |
| TraesCS5A01G526000.1 | Wheat | plasma membrane | 59.87 | 57.53 |
| TraesCS4D01G350300.1 | Wheat | plasma membrane | 59.56 | 57.06 |
| Zm00001d027355_P001 | Maize | plasma membrane | 57.05 | 56.52 |
| CDX70020 | Canola | mitochondrion, plasma membrane | 57.37 | 56.48 |
| EES11282 | Sorghum | cytosol | 60.19 | 56.47 |
| EER95642 | Sorghum | cytosol, golgi, plasma membrane | 57.68 | 56.44 |
| Zm00001d002632_P001 | Maize | plasma membrane | 59.25 | 55.59 |
| CDX78286 | Canola | plasma membrane | 56.11 | 55.08 |
| CDX81043 | Canola | plasma membrane | 56.11 | 54.91 |
| TraesCS2A01G401000.1 | Wheat | plasma membrane | 58.62 | 54.84 |
| TraesCS2B01G419100.1 | Wheat | plasma membrane | 57.99 | 54.73 |
| TraesCS2D01G398500.1 | Wheat | plasma membrane | 57.99 | 54.57 |
| Os04t0569300-01 | Rice | cytosol | 57.37 | 53.51 |
| CDY47879 | Canola | plasma membrane | 61.44 | 51.44 |
| CDY39528 | Canola | plasma membrane | 61.76 | 51.44 |
| CDX98993 | Canola | cytosol | 51.1 | 51.26 |
| CDX87921 | Canola | plasma membrane | 32.29 | 49.05 |
| HORVU4Hr1G086150.3 | Barley | plastid | 59.25 | 48.71 |
| CDY60552 | Canola | plasma membrane | 45.45 | 46.47 |
| CDY40148 | Canola | plasma membrane | 45.77 | 46.35 |
| CDX78204 | Canola | plasma membrane | 56.43 | 46.04 |
| CDY65838 | Canola | plasma membrane | 56.43 | 46.04 |
| CDY65908 | Canola | plasma membrane | 45.45 | 46.03 |
| CDX73525 | Canola | plasma membrane | 55.8 | 44.28 |
| CDX76189 | Canola | cytosol, peroxisome, plasma membrane | 54.23 | 44.25 |
| CDY30844 | Canola | cytosol, peroxisome, plasma membrane | 54.23 | 44.25 |
| HORVU2Hr1G095170.6 | Barley | mitochondrion | 48.59 | 42.01 |
| HORVU3Hr1G029090.1 | Barley | plastid | 18.5 | 38.82 |
| HORVU0Hr1G006330.1 | Barley | plastid | 18.5 | 38.82 |
| CDX87497 | Canola | plasma membrane | 39.81 | 32.9 |
| CDX88394 | Canola | plasma membrane | 38.87 | 31.96 |
Protein Annotations
| Gene3D:1.20.1540.10 | MapMan:19.4.2.6 | GO:A0A078I7Y3 | UniProt:A0A078I7Y3 | EnsemblPlants:CDY45976 | ProteinID:CDY45976 |
| ProteinID:CDY45976.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004252 | GO:GO:0005575 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 |
| GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00082992001 | InterPro:IPR035952 | PFAM:PF01694 | PANTHER:PTHR22936 | PANTHER:PTHR22936:SF63 |
| InterPro:Peptidase_S54_rhomboid | InterPro:Peptidase_S54_rhomboid_dom | InterPro:Rhomboid-like_sf | SUPFAM:SSF144091 | TMHMM:TMhelix | UniParc:UPI0004EEF642 |
| SEG:seg | : | : | : | : | : |
Description
BnaA09g12900DRhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078I7Y3]
Coordinates
chrLK032644:-:187845..189649
Molecular Weight (calculated)
35534.9 Da
IEP (calculated)
10.060
GRAVY (calculated)
0.355
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MANRDVERGG KQNRGVHNNN NYFYDESSRN THWTPWLVPA IVVANLAVFI AVMFVNDCPK KINGPNKACV ARFLGRFSFQ PLRENPLFGP SSSTLERMGA
101: LEWRKVVHEH QGWRLVTCMW LHAGIIHLLT NMLSLIFIGI RLEQQFGFIR VGLIYLVSGF GGSILSSLFL QESISVGASG ALFGLLGAML SELLTNWTIY
201: ANKAAALVTL LFIIAINLGL GLLPRVDNFA HIGGFLTGLC LGFILLVRPQ YGWEASRTNT SVTKRKHSMY QYVLFVVAAV LLVVGLTVGL VMLFKGENGN
301: KHCKWCHRLS CFPTSKWTC
101: LEWRKVVHEH QGWRLVTCMW LHAGIIHLLT NMLSLIFIGI RLEQQFGFIR VGLIYLVSGF GGSILSSLFL QESISVGASG ALFGLLGAML SELLTNWTIY
201: ANKAAALVTL LFIIAINLGL GLLPRVDNFA HIGGFLTGLC LGFILLVRPQ YGWEASRTNT SVTKRKHSMY QYVLFVVAAV LLVVGLTVGL VMLFKGENGN
301: KHCKWCHRLS CFPTSKWTC
001: MANRDVERVG KKNRGANNNY FYEESSGETH WTSWLIPAIV VANLAVFIAV MFVNDCPKKI TGPNKECVAR FLGRFSFQPL KENPLFGPSS STLEKMGALE
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC
Arabidopsis Description
RBL2RHOMBOID-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN1]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.