Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- extracellular 1
- golgi 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0200500-01 | |
| Os02t0509600-01 | |
| Os05t0520100-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G63120.1 | Os02t0509600-01 | AT1G27300.1 | 21798944 |
| AT5G07250.1 | Os01t0200500-01 | AT3G16310.1 | 21798944 |
| AT5G07250.1 | Os05t0520100-00 | AT3G16310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0525900-01 | Rice | plasma membrane | 85.14 | 85.14 |
| TraesCS7A01G269900.1 | Wheat | plasma membrane | 84.83 | 84.83 |
| TraesCS7D01G270400.1 | Wheat | plasma membrane | 86.07 | 84.76 |
| HORVU7Hr1G056630.1 | Barley | plasma membrane | 85.45 | 84.66 |
| TraesCS7B01G168100.1 | Wheat | plasma membrane | 85.45 | 84.15 |
| Zm00001d052734_P002 | Maize | plasma membrane | 81.42 | 81.68 |
| GSMUA_Achr2P03320_001 | Banana | cytosol, golgi, plasma membrane | 68.11 | 68.54 |
| GSMUA_Achr1P07920_001 | Banana | plasma membrane | 66.56 | 66.98 |
| GSMUA_Achr9P20880_001 | Banana | plasma membrane | 65.63 | 65.84 |
| KRH09112 | Soybean | plasma membrane | 66.25 | 65.05 |
| AT1G63120.1 | Thale cress | cytosol, golgi, plasma membrane | 63.16 | 64.35 |
| Os03t0116400-01 | Rice | cytosol, peroxisome, plasma membrane | 64.71 | 64.31 |
| KRH38564 | Soybean | plasma membrane | 65.63 | 64.24 |
| Os10t0521900-01 | Rice | plasma membrane | 65.33 | 63.55 |
| PGSC0003DMT400037141 | Potato | cytosol, golgi, plasma membrane | 62.54 | 63.52 |
| Solyc03g026080.2.1 | Tomato | plasma membrane | 61.92 | 62.89 |
| CDY47350 | Canola | plasma membrane | 61.3 | 62.86 |
| VIT_02s0025g04130.t01 | Wine grape | cytosol, plasma membrane, vacuole | 63.47 | 62.5 |
| Bra027622.1-P | Field mustard | plasma membrane | 60.68 | 62.42 |
| CDY67235 | Canola | plasma membrane | 61.61 | 62.38 |
| Bra026997.1-P | Field mustard | cytosol, golgi, plasma membrane | 61.61 | 62.38 |
| CDY45976 | Canola | plasma membrane | 61.61 | 62.38 |
| KRG91456 | Soybean | cytosol, golgi, plasma membrane | 63.47 | 62.31 |
| VIT_16s0100g00640.t01 | Wine grape | plasma membrane | 61.92 | 61.54 |
| KRH35359 | Soybean | cytosol, golgi, plasma membrane | 62.85 | 61.52 |
| CDX98992 | Canola | plasma membrane | 64.4 | 61.18 |
| CDY49197 | Canola | plasma membrane | 60.68 | 61.06 |
| CDX70021 | Canola | plasma membrane | 64.4 | 59.94 |
| Bra009279.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 64.4 | 59.94 |
| PGSC0003DMT400007890 | Potato | plasma membrane | 60.99 | 59.7 |
| AT5G07250.1 | Thale cress | plasma membrane | 63.78 | 59.54 |
| CDX70020 | Canola | mitochondrion, plasma membrane | 59.44 | 59.26 |
| Solyc08g080500.2.1 | Tomato | cytosol, golgi, plasma membrane | 60.99 | 59.16 |
| Bra019783.1-P | Field mustard | plasma membrane | 55.11 | 58.55 |
| CDY66606 | Canola | plasma membrane | 55.11 | 58.55 |
| CDX78286 | Canola | plasma membrane | 57.89 | 57.54 |
| Bra005930.1-P | Field mustard | plasma membrane | 57.59 | 57.23 |
| AT1G12750.4 | Thale cress | plasma membrane | 54.18 | 57.0 |
| CDX81043 | Canola | plasma membrane | 57.28 | 56.75 |
| Os04t0569300-01 | Rice | cytosol | 57.59 | 54.39 |
| CDY53134 | Canola | plasma membrane | 51.7 | 53.18 |
| CDY41251 | Canola | plasma membrane | 51.39 | 53.04 |
| Bra013673.1-P | Field mustard | plasma membrane | 46.13 | 52.84 |
| CDX98993 | Canola | cytosol | 52.01 | 52.83 |
| AT4G23070.1 | Thale cress | plasma membrane | 50.15 | 51.76 |
| CDY60266 | Canola | plasma membrane | 56.35 | 50.84 |
| Os11t0704800-01 | Rice | plasma membrane | 58.82 | 50.8 |
| Bra009280.1-P | Field mustard | cytosol | 56.97 | 49.33 |
| Os01t0147300-01 | Rice | plasma membrane | 28.79 | 45.59 |
Protein Annotations
| Gene3D:1.20.1540.10 | MapMan:19.4.2.6 | EntrezGene:4346228 | EMBL:AK061056 | ProteinID:BAD09236.1 | ProteinID:BAF24336.1 |
| ProteinID:BAT06545.1 | ProteinID:EEE69103.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004252 | GO:GO:0005575 |
| GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016787 | GO:GO:0019538 | InterPro:IPR035952 | EnsemblPlantsGene:Os08g0546700 | EnsemblPlants:Os08t0546700-01 | PFAM:PF01694 |
| PANTHER:PTHR22936 | PANTHER:PTHR22936:SF62 | InterPro:Peptidase_S54_rhomboid | InterPro:Peptidase_S54_rhomboid_dom | UniProt:Q6ZFV7 | InterPro:Rhomboid-like_sf |
| MEROPS:S54.A02 | SUPFAM:SSF144091 | TMHMM:TMhelix | UniParc:UPI000023AD7A | RefSeq:XP_015648544.1 | SEG:seg |
Description
Rhomboid 14, RHOMBOID 14Peptidase S54, rhomboid domain containing protein. (Os08t0546700-01)
Coordinates
chr8:-:27376052..27378939
Molecular Weight (calculated)
35930.3 Da
IEP (calculated)
8.713
GRAVY (calculated)
0.475
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSGEGKG AGGAGYQYAP YGGSYYDEER RWWPWLVPTV LVACIVVFLV EMFVNDCPRH GSPLRGESCV AGFLHQFAFQ PLRENPLLGP SSATLEKMGA
101: LDWAKVVHQH QAWRLISCIW LHAGLIHLIV NMLSLLFIGL RLEQQFGFVR IGIIYLLSGF GGSVLSVLFL RNNYISVGAS GALFGLLGSM LSELIMNWTI
201: YSNKAAAIIT LLFIIAINLA IGILPHADNF AHIGGFVTGF LLGFVLLARP QFGWMERHEL PQTNQPRKYR AYQYVLWAVA LFLLLVGFVI ALVMLFKGKN
301: GNDGCHWCHY LNCIPTSRWK CST
101: LDWAKVVHQH QAWRLISCIW LHAGLIHLIV NMLSLLFIGL RLEQQFGFVR IGIIYLLSGF GGSVLSVLFL RNNYISVGAS GALFGLLGSM LSELIMNWTI
201: YSNKAAAIIT LLFIIAINLA IGILPHADNF AHIGGFVTGF LLGFVLLARP QFGWMERHEL PQTNQPRKYR AYQYVLWAVA LFLLLVGFVI ALVMLFKGKN
301: GNDGCHWCHY LNCIPTSRWK CST
001: MANRDVERVG KKNRGANNNY FYEESSGETH WTSWLIPAIV VANLAVFIAV MFVNDCPKKI TGPNKECVAR FLGRFSFQPL KENPLFGPSS STLEKMGALE
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC
Arabidopsis Description
RBL2RHOMBOID-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN1]
SUBAcon: [cytosol,plasma membrane,golgi]
SUBAcon: [cytosol,plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.