Factsheet for Os03t0116400-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, peroxisome

Predictor Summary:

nucleus 1
plasma membrane 3
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0200500-01
Os02t0509600-01
Os05t0520100-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63120.1	Os02t0509600-01	AT1G27300.1	21798944
AT5G07250.1	Os01t0200500-01	AT3G16310.1	21798944
AT5G07250.1	Os05t0520100-00	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95642	Sorghum	cytosol, golgi, plasma membrane	82.15	81.9
TraesCS5A01G526000.1	Wheat	plasma membrane	79.38	77.71
Zm00001d027355_P001	Maize	plasma membrane	76.62	77.33
TraesCS4B01G356600.1	Wheat	plasma membrane	79.38	77.25
TraesCS4D01G350300.1	Wheat	plasma membrane	79.08	77.18
Os10t0521900-01	Rice	plasma membrane	76.0	74.4
HORVU4Hr1G086150.3	Barley	plastid	78.46	65.72
Os09t0525900-01	Rice	plasma membrane	64.92	65.33
Os08t0546700-01	Rice	plasma membrane	64.31	64.71
PGSC0003DMT400037141	Potato	cytosol, golgi, plasma membrane	62.15	63.52
AT1G63120.1	Thale cress	cytosol, golgi, plasma membrane	61.85	63.41
KRH09112	Soybean	plasma membrane	63.69	62.92
Solyc03g026080.2.1	Tomato	plasma membrane	61.54	62.89
KRG91456	Soybean	cytosol, golgi, plasma membrane	63.38	62.61
VIT_02s0025g04130.t01	Wine grape	cytosol, plasma membrane, vacuole	63.08	62.5
PGSC0003DMT400007890	Potato	plasma membrane	63.38	62.42
CDY47350	Canola	plasma membrane	60.31	62.22
KRH35359	Soybean	cytosol, golgi, plasma membrane	63.08	62.12
Solyc08g080500.2.1	Tomato	cytosol, golgi, plasma membrane	63.38	61.86
KRH38564	Soybean	plasma membrane	62.77	61.82
Bra027622.1-P	Field mustard	plasma membrane	59.69	61.78
VIT_16s0100g00640.t01	Wine grape	plasma membrane	61.54	61.54
CDY45976	Canola	plasma membrane	60.31	61.44
Bra026997.1-P	Field mustard	cytosol, golgi, plasma membrane	60.31	61.44
CDY67235	Canola	plasma membrane	60.0	61.13
CDY49197	Canola	plasma membrane	60.0	60.75
CDX98992	Canola	plasma membrane	61.85	59.12
Bra009279.1-P	Field mustard	cytosol, peroxisome, plasma membrane	63.08	59.08
CDX70021	Canola	plasma membrane	62.77	58.79
AT5G07250.1	Thale cress	plasma membrane	62.15	58.38
CDX78286	Canola	plasma membrane	57.85	57.85
Bra005930.1-P	Field mustard	plasma membrane	57.85	57.85
CDX70020	Canola	mitochondrion, plasma membrane	57.54	57.72
CDX81043	Canola	plasma membrane	57.85	57.67
Bra019783.1-P	Field mustard	plasma membrane	53.54	57.24
CDY66606	Canola	plasma membrane	53.54	57.24
AT1G12750.4	Thale cress	plasma membrane	52.92	56.03
Os04t0569300-01	Rice	cytosol	56.92	54.09
CDY53134	Canola	plasma membrane	52.0	53.82
CDY41251	Canola	plasma membrane	51.38	53.35
Bra013673.1-P	Field mustard	plasma membrane	46.15	53.19
CDX98993	Canola	cytosol	51.38	52.52
AT4G23070.1	Thale cress	plasma membrane	50.46	52.4
Os11t0704800-01	Rice	plasma membrane	58.46	50.8
CDY60266	Canola	plasma membrane	54.77	49.72
Bra009280.1-P	Field mustard	cytosol	55.69	48.53
Os01t0147300-01	Rice	plasma membrane	28.31	45.1

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	EntrezGene:4331402	ProteinID:ABF93652.1	EMBL:AK061443	ProteinID:BAF10673.1
ProteinID:BAS81980.1	ProteinID:EAZ25358.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0019538	InterPro:IPR035952	EnsemblPlantsGene:Os03g0116400	EnsemblPlants:Os03t0116400-01	PFAM:PF01694
PANTHER:PTHR22936	PANTHER:PTHR22936:SF21	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom	UniProt:Q10SN4	InterPro:Rhomboid-like_sf
MEROPS:S54.A02	SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI0000DB40BB	RefSeq:XP_015631615.1	SEG:seg

Description

Rhomboid 7, RHOMBOID 7Similar to Membrane protein. (Os03t0116400-01)

Coordinates

chr3:+:932241..934775

Molecular Weight (calculated)

35890.4 Da

IEP (calculated)

9.386

GRAVY (calculated)

0.461

Length

325 amino acids

Sequence
(BLAST)

001: MATSHADVEK GARRKEVGKV PSPLYPQHEG EREWVPWIVP SFLVANIVVF VLTMYANNCP LHTPPRSGKC IARFLGRFSF QPLHENPLLG PSSATLQKMG
101: ALVWDKVVHE HQGYRLITSI WLHAGVLHLV ANMLSLIFIG LRLEQQFGYV RIGAIYLLSG LGGSVLSSLF IRNHISVGAS GALFGLLGAM LSELLTNWTI
201: YTNKVAAVIT LLFVIAVNLA LGILPHVNNF AHIGGFLTGF LLGFVLLMRP HFGWMERYSL PSGSPCSSKK YLVYQWILLA IATALVIVGF AVGMTMLFRG
301: ENANDSCHWC HYLSCVPTSR WTCSN

Best Arabidopsis Sequence Match ( AT1G63120.1 )
(BLAST)

001: MANRDVERVG KKNRGANNNY FYEESSGETH WTSWLIPAIV VANLAVFIAV MFVNDCPKKI TGPNKECVAR FLGRFSFQPL KENPLFGPSS STLEKMGALE
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC

Arabidopsis Description

RBL2RHOMBOID-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN1]
SUBAcon: [cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.