Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- golgi 1
- mitochondrion 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27341663
|
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER95642 | Sorghum | cytosol, golgi, plasma membrane | 86.96 | 85.89 |
| Os03t0116400-01 | Rice | cytosol, peroxisome, plasma membrane | 77.33 | 76.62 |
| TraesCS5A01G526000.1 | Wheat | plasma membrane | 77.64 | 75.3 |
| TraesCS4B01G356600.1 | Wheat | plasma membrane | 76.71 | 73.95 |
| TraesCS4D01G350300.1 | Wheat | plasma membrane | 76.09 | 73.57 |
| Zm00001d029668_P001 | Maize | plasma membrane | 68.63 | 66.17 |
| Zm00001d029667_P001 | Maize | plasma membrane | 68.63 | 66.17 |
| HORVU4Hr1G086150.3 | Barley | plastid | 76.71 | 63.66 |
| Zm00001d021231_P002 | Maize | plasma membrane | 61.49 | 61.11 |
| Zm00001d006179_P002 | Maize | plasma membrane | 61.18 | 60.24 |
| Zm00001d052734_P002 | Maize | plasma membrane | 59.94 | 59.94 |
| Solyc03g026080.2.1 | Tomato | plasma membrane | 58.39 | 59.12 |
| Solyc08g080500.2.1 | Tomato | cytosol, golgi, plasma membrane | 60.87 | 58.86 |
| PGSC0003DMT400037141 | Potato | cytosol, golgi, plasma membrane | 58.07 | 58.8 |
| AT1G63120.1 | Thale cress | cytosol, golgi, plasma membrane | 57.45 | 58.36 |
| KRH09112 | Soybean | plasma membrane | 59.63 | 58.36 |
| PGSC0003DMT400007890 | Potato | plasma membrane | 59.32 | 57.88 |
| KRG91456 | Soybean | cytosol, golgi, plasma membrane | 59.01 | 57.75 |
| VIT_02s0025g04130.t01 | Wine grape | cytosol, plasma membrane, vacuole | 58.7 | 57.62 |
| KRH38564 | Soybean | plasma membrane | 59.01 | 57.58 |
| Bra026997.1-P | Field mustard | cytosol, golgi, plasma membrane | 56.52 | 57.05 |
| CDY45976 | Canola | plasma membrane | 56.52 | 57.05 |
| Bra027622.1-P | Field mustard | plasma membrane | 55.59 | 57.01 |
| KRH35359 | Soybean | cytosol, golgi, plasma membrane | 58.39 | 56.97 |
| CDY67235 | Canola | plasma membrane | 56.21 | 56.74 |
| CDY47350 | Canola | plasma membrane | 55.28 | 56.51 |
| CDY49197 | Canola | plasma membrane | 56.21 | 56.39 |
| VIT_16s0100g00640.t01 | Wine grape | plasma membrane | 56.83 | 56.31 |
| CDX98992 | Canola | plasma membrane | 58.07 | 55.0 |
| Bra009279.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 59.01 | 54.76 |
| CDX70021 | Canola | plasma membrane | 58.39 | 54.18 |
| AT5G07250.1 | Thale cress | plasma membrane | 57.76 | 53.76 |
| CDX78286 | Canola | plasma membrane | 54.04 | 53.54 |
| Bra005930.1-P | Field mustard | plasma membrane | 54.04 | 53.54 |
| CDX81043 | Canola | plasma membrane | 54.04 | 53.37 |
| CDX70020 | Canola | mitochondrion, plasma membrane | 53.42 | 53.09 |
| CDY66606 | Canola | plasma membrane | 49.38 | 52.3 |
| Bra019783.1-P | Field mustard | plasma membrane | 49.38 | 52.3 |
| Zm00001d002632_P001 | Maize | plasma membrane | 54.04 | 51.18 |
| AT1G12750.4 | Thale cress | plasma membrane | 48.45 | 50.81 |
| CDY53134 | Canola | plasma membrane | 49.38 | 50.64 |
| CDY41251 | Canola | plasma membrane | 49.07 | 50.48 |
| Bra013673.1-P | Field mustard | plasma membrane | 44.1 | 50.35 |
| AT4G23070.1 | Thale cress | plasma membrane | 48.14 | 49.52 |
| CDX98993 | Canola | cytosol | 48.76 | 49.37 |
| CDY60266 | Canola | plasma membrane | 50.62 | 45.53 |
| Bra009280.1-P | Field mustard | cytosol | 51.55 | 44.5 |
| Zm00001d048606_P001 | Maize | cytosol, nucleus, plasma membrane | 53.73 | 43.14 |
| Zm00001d039870_P002 | Maize | plasma membrane | 52.17 | 33.47 |
Protein Annotations
| Gene3D:1.20.1540.10 | EntrezGene:100283507 | MapMan:19.4.2.6 | UniProt:B4FQY5 | EMBL:BT039523 | EMBL:EU964967 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004252 | GO:GO:0005575 | GO:GO:0006508 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008233 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019538 |
| InterPro:IPR035952 | ProteinID:ONL92926.1 | PFAM:PF01694 | PANTHER:PTHR22936 | PANTHER:PTHR22936:SF21 | InterPro:Peptidase_S54_rhomboid |
| InterPro:Peptidase_S54_rhomboid_dom | InterPro:Rhomboid-like_sf | MEROPS:S54.015 | SUPFAM:SSF144091 | TMHMM:TMhelix | UniParc:UPI00017B799C |
| EnsemblPlantsGene:Zm00001d027355 | EnsemblPlants:Zm00001d027355_P001 | EnsemblPlants:Zm00001d027355_T001 | SEG:seg | : | : |
Description
RHOMBOID-like protein 3
Coordinates
chr1:+:3573479..3575207
Molecular Weight (calculated)
35098.6 Da
IEP (calculated)
9.892
GRAVY (calculated)
0.487
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MATRADVEKG GPARKEPGKV PSPLYPQHEG EREWVPWLVP VIFVASITVF VVTMYANNCP ARDTNKCVAR FLGRFSFQPL RQNPLFGPSS ATLTKMGALV
101: WEKVVHRHQG WRLLSSMWLH AGVIHLVANM LCLLFIGMRL EQQFGYVRIG AIYVLSGVGG AVLSSLVVRN RVTVGASGAL LGLLGAMLSE LLTNWTIYTN
201: KAAAVATLLS VAAVNLVLGV LPHVDNLAHL GGFLAGFLLG FVVLMRPHLG WMERYGLPAG APCTARKYLA YQWTLLAVAI IILLVGFAAG MAMLFRGANA
301: NDSCHWCHYL SCVPTARWNC TN
101: WEKVVHRHQG WRLLSSMWLH AGVIHLVANM LCLLFIGMRL EQQFGYVRIG AIYVLSGVGG AVLSSLVVRN RVTVGASGAL LGLLGAMLSE LLTNWTIYTN
201: KAAAVATLLS VAAVNLVLGV LPHVDNLAHL GGFLAGFLLG FVVLMRPHLG WMERYGLPAG APCTARKYLA YQWTLLAVAI IILLVGFAAG MAMLFRGANA
301: NDSCHWCHYL SCVPTARWNC TN
001: MRSRDMERGR KHRGDTQWTA WLTPTIVVAN VSIFIVVMYT NDCPKTTTGA NGDCVAKLLR RFSFQPLREN PFLGPSSSTL EKLGALDWKK VVQGNEKWRL
101: ITAMWLHAGI IHLVMNMFDV IIFGIRLEQQ FGFIRIGLIY LISGFGGSIL SALFLQKSIS VGASGALLGL MGAMLSELLT NWTIYKSKLC ALLSFLFIIA
201: INLAIGLLPW VDNFAHIGGL LTGFCLGFIL LMQPQSGWEE FRNSSQYGAR ARSKYNPCQY VLFFVAAVLV VAGLTVGLVM LFDGENGNKH CKWCHRLDCY
301: PTSKWSC
101: ITAMWLHAGI IHLVMNMFDV IIFGIRLEQQ FGFIRIGLIY LISGFGGSIL SALFLQKSIS VGASGALLGL MGAMLSELLT NWTIYKSKLC ALLSFLFIIA
201: INLAIGLLPW VDNFAHIGGL LTGFCLGFIL LMQPQSGWEE FRNSSQYGAR ARSKYNPCQY VLFFVAAVLV VAGLTVGLVM LFDGENGNKH CKWCHRLDCY
301: PTSKWSC
Arabidopsis Description
RBL6RHOMBOID-like protein 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ48]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.