CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 1
golgi 2
plasma membrane 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH09922
KRH22653
KRH23409
KRH26664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07250.1	KRH09922	AT3G16310.1	21798944
AT5G07250.1	KRH23409	AT3G16310.1	21798944
AT5G07250.1	KRH22653	AT5G22290.1	21798944
AT5G07250.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91456	Soybean	cytosol, golgi, plasma membrane	96.06	96.35
KRH09112	Soybean	plasma membrane	77.88	78.12
KRH38564	Soybean	plasma membrane	77.27	77.27
Solyc03g026080.2.1	Tomato	plasma membrane	68.18	70.75
VIT_16s0100g00640.t01	Wine grape	plasma membrane	69.09	70.15
PGSC0003DMT400037141	Potato	cytosol, golgi, plasma membrane	67.27	69.81
GSMUA_Achr11P...	Banana	cytosol	67.88	66.67
Os09t0525900-01	Rice	plasma membrane	63.33	64.71
Zm00001d021231_P002	Maize	plasma membrane	62.73	63.89
TraesCS5D01G320400.1	Wheat	plasma membrane	61.82	63.75
TraesCS5A01G314000.1	Wheat	plasma membrane	61.82	63.35
HORVU5Hr1G080690.2	Barley	plasma membrane	61.52	63.24
TraesCS5B01G314900.1	Wheat	plasma membrane	61.82	63.16
Os03t0116400-01	Rice	cytosol, peroxisome, plasma membrane	62.12	63.08
Zm00001d052734_P002	Maize	plasma membrane	61.52	63.04
Zm00001d006179_P002	Maize	plasma membrane	62.42	63.0
Os08t0546700-01	Rice	plasma membrane	61.52	62.85
EER99221	Sorghum	cytosol, peroxisome, plasma membrane	61.82	62.77
CDX98992	Canola	plasma membrane	64.55	62.65
TraesCS7A01G269900.1	Wheat	plasma membrane	61.21	62.54
Os10t0521900-01	Rice	plasma membrane	62.73	62.35
TraesCS4A01G179600.1	Wheat	plasma membrane	36.06	61.98
Bra009279.1-P	Field mustard	cytosol, peroxisome, plasma membrane	65.15	61.96
AT5G07250.1	Thale cress	plasma membrane	64.85	61.85
CDX70021	Canola	plasma membrane	64.85	61.67
TraesCS7B01G168100.1	Wheat	plasma membrane	61.21	61.59
TraesCS7D01G270400.1	Wheat	plasma membrane	61.21	61.59
Zm00001d029667_P001	Maize	plasma membrane	62.12	61.38
Zm00001d029668_P001	Maize	plasma membrane	62.12	61.38
CDX70020	Canola	mitochondrion, plasma membrane	60.0	61.11
HORVU7Hr1G056630.1	Barley	plasma membrane	60.3	61.04
EER94630	Sorghum	cytosol, golgi, plasma membrane	61.82	60.9
CDX81043	Canola	plasma membrane	59.7	60.43
EER95642	Sorghum	cytosol, golgi, plasma membrane	59.39	60.12
Bra005930.1-P	Field mustard	plasma membrane	59.09	60.0
TraesCS1D01G187500.1	Wheat	plasma membrane	58.48	59.75
TraesCS5A01G526000.1	Wheat	plasma membrane	60.0	59.64
CDX78286	Canola	plasma membrane	58.48	59.38
TraesCS1B01G196600.1	Wheat	plasma membrane	58.48	59.2
TraesCS1A01G188900.1	Wheat	plasma membrane	58.48	59.02
TraesCS4B01G356600.1	Wheat	plasma membrane	59.7	58.98
HORVU1Hr1G048610.3	Barley	plasma membrane	57.88	58.77
Zm00001d027355_P001	Maize	plasma membrane	56.97	58.39
TraesCS4D01G350300.1	Wheat	plasma membrane	58.79	58.26
EES11282	Sorghum	cytosol	59.09	57.35
Zm00001d002632_P001	Maize	plasma membrane	57.88	56.18
TraesCS2A01G401000.1	Wheat	plasma membrane	57.58	55.72
CDX98993	Canola	cytosol	53.33	55.35
TraesCS2B01G419100.1	Wheat	plasma membrane	56.06	54.73
TraesCS2D01G398500.1	Wheat	plasma membrane	56.06	54.57
Os04t0569300-01	Rice	cytosol	56.06	54.09
Bra009280.1-P	Field mustard	cytosol	58.79	52.01
KRH10251	Soybean	plasma membrane	60.91	51.67
KRH23080	Soybean	plasma membrane	60.91	51.28
KRH66050	Soybean	plasma membrane	59.7	51.17
KRG99546	Soybean	plasma membrane	59.39	51.04
HORVU4Hr1G086150.3	Barley	plastid	59.09	50.26
KRH09741	Soybean	plasma membrane	46.67	48.73
KRH49106	Soybean	plasma membrane	38.18	47.01
KRG99955	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	53.03	44.19
HORVU2Hr1G095170.6	Barley	mitochondrion	45.76	40.92
HORVU3Hr1G029090.1	Barley	plastid	17.58	38.16
HORVU0Hr1G006330.1	Barley	plastid	17.58	38.16
KRH64762	Soybean	plasma membrane	40.91	36.68
KRH53148	Soybean	plasma membrane	41.21	36.46

Protein Annotations

Gene3D:1.20.1540.10	EntrezGene:100809265	MapMan:19.4.2.6	EMBL:ACUP02006668	EnsemblPlantsGene:GLYMA_10G238200	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	UniProt:I1LDT9
InterPro:IPR035952	EnsemblPlants:KRH35359	ProteinID:KRH35359	ProteinID:KRH35359.1	PFAM:PF01694	PANTHER:PTHR22936
PANTHER:PTHR22936:SF65	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom	InterPro:Rhomboid-like_sf	MEROPS:S54.015	SUPFAM:SSF144091
TMHMM:TMhelix	UniParc:UPI00023CD495	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:46680865..46684088

Molecular Weight (calculated)

36802.4 Da

IEP (calculated)

9.414

GRAVY (calculated)

0.354

Length

330 amino acids

Sequence
(BLAST)

001: MARRDLESGG GVTKNNRSAE ENYSAPESSH VYDSETHWTS WLVPMFVVAN IAVFVITMYI NNCPRNNIRF QGRCVARFLG RFSFQPMQEN PLLGPSSSTL
101: TKMGALRWDN VVNRHQGWRL VTCIWLHAGV IHLLANMLSL VFIGIRLEQQ FGFIKIGIIY LVSGFGGSVL SSLFIRDHIS VGASGALFGL LGAMLSELIT
201: NWTIYSNKAM ALITLLVIIV INLGIGILPH VDNFAHIGGF LVGLLLGFIL LPRPQFGWLE QRRLPAGVQM KSKYKTHQYV LGVVSLILLI AGLSTALVML
301: FRGEKGYDHC HWCRYLTCVP TSKWECSNDS

Best Arabidopsis Sequence Match ( AT1G63120.1 )
(BLAST)

001: MANRDVERVG KKNRGANNNY FYEESSGETH WTSWLIPAIV VANLAVFIAV MFVNDCPKKI TGPNKECVAR FLGRFSFQPL KENPLFGPSS STLEKMGALE
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC

Arabidopsis Description

RBL2RHOMBOID-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN1]
SUBAcon: [cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.