Skip to main content
crop-pal logo
Wheat
Search for another protein from :
Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 1
  • mitochondrion 1
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, plasma membrane
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G340600.1
TraesCS1D01G342600.1
TraesCS2A01G346700.1
TraesCS2B01G365000.1
TraesCS2D01G345400.1
TraesCS3A01G274800.1
TraesCS3A01G313000.1
TraesCS3B01G158900.1
TraesCS3B01G308400.1
TraesCS3D01G141300.1
TraesCS3D01G274500.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G63120.1 TraesCS2A01G346700.1 AT1G27300.1 21798944
AT1G63120.1 TraesCS2B01G365000.1 AT1G27300.1 21798944
AT1G63120.1 TraesCS2D01G345400.1 AT1G27300.1 21798944
AT5G07250.1 TraesCS1A01G340600.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS1D01G342600.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3A01G274800.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3A01G313000.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3B01G158900.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3B01G308400.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3D01G141300.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3D01G274500.1 AT3G16310.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1B01G196600.1 Wheat plasma membrane 98.45 97.55
TraesCS1A01G188900.1 Wheat plasma membrane 97.52 96.33
HORVU1Hr1G048610.3 Barley plasma membrane 95.67 95.08
Zm00001d029668_P001 Maize plasma membrane 80.19 77.54
Zm00001d029667_P001 Maize plasma membrane 80.19 77.54
Os10t0521900-01 Rice plasma membrane 78.95 76.81
EER94630 Sorghum cytosol, golgi, plasma membrane 79.26 76.42
TraesCS4D01G350300.1 Wheat plasma membrane 68.42 66.37
PGSC0003DMT400037141 Potato cytosol, golgi, plasma membrane 61.61 62.58
Solyc03g026080.2.1 Tomato plasma membrane 61.3 62.26
VIT_02s0025g04130.t01 Wine grape cytosol, plasma membrane, vacuole 62.54 61.59
PGSC0003DMT400007890 Potato plasma membrane 62.85 61.52
KRH09112 Soybean plasma membrane 62.23 61.09
VIT_16s0100g00640.t01 Wine grape plasma membrane 61.3 60.92
Bra026997.1-P Field mustard cytosol, golgi, plasma membrane 60.06 60.81
CDY45976 Canola plasma membrane 60.06 60.81
Solyc08g080500.2.1 Tomato cytosol, golgi, plasma membrane 62.54 60.66
TraesCS5D01G320400.1 Wheat plasma membrane 60.06 60.62
AT1G63120.1 Thale cress cytosol, golgi, plasma membrane 59.44 60.57
CDY67235 Canola plasma membrane 59.75 60.5
KRH38564 Soybean plasma membrane 61.3 60.0
CDY47350 Canola plasma membrane 58.2 59.68
Bra027622.1-P Field mustard plasma membrane 57.89 59.55
KRG91456 Soybean cytosol, golgi, plasma membrane 60.06 58.97
TraesCS7D01G270400.1 Wheat plasma membrane 59.44 58.54
KRH35359 Soybean cytosol, golgi, plasma membrane 59.75 58.48
CDY49197 Canola plasma membrane 57.89 58.26
AT5G07250.1 Thale cress plasma membrane 61.61 57.51
CDX98992 Canola plasma membrane 60.37 57.35
Bra019783.1-P Field mustard plasma membrane 53.87 57.24
CDY66606 Canola plasma membrane 53.87 57.24
TraesCS2D01G398500.1 Wheat plasma membrane 59.44 56.64
CDX78286 Canola plasma membrane 56.97 56.62
Bra005930.1-P Field mustard plasma membrane 56.97 56.62
CDX70021 Canola plasma membrane 60.68 56.48
Bra009279.1-P Field mustard cytosol, peroxisome, plasma membrane 60.68 56.48
AT1G12750.4 Thale cress plasma membrane 53.56 56.35
CDX81043 Canola plasma membrane 55.73 55.21
CDX70020 Canola mitochondrion, plasma membrane 54.49 54.32
Bra013673.1-P Field mustard plasma membrane 45.2 51.77
CDY53134 Canola plasma membrane 50.15 51.59
TraesCS3D01G070700.1 Wheat mitochondrion, plasma membrane 48.61 51.48
CDY41251 Canola plasma membrane 49.85 51.44
AT4G23070.1 Thale cress plasma membrane 49.54 51.12
CDY60266 Canola plasma membrane 55.73 50.28
HORVU0Hr1G006330.1 Barley plastid 22.91 48.68
HORVU3Hr1G029090.1 Barley plastid 22.91 48.68
CDX98993 Canola cytosol 47.68 48.43
TraesCS4D01G136600.2 Wheat plasma membrane 55.42 47.11
Bra009280.1-P Field mustard cytosol 52.94 45.84
Protein Annotations
Gene3D:1.20.1540.10MapMan:19.4.2.6GO:GO:0003674GO:GO:0003824GO:GO:0004252GO:GO:0005575
GO:GO:0006508GO:GO:0008150GO:GO:0008152GO:GO:0016020GO:GO:0016021GO:GO:0016787
GO:GO:0019538InterPro:IPR035952PFAM:PF01694PANTHER:PTHR22936PANTHER:PTHR22936:SF63InterPro:Peptidase_S54_rhomboid
InterPro:Peptidase_S54_rhomboid_domInterPro:Rhomboid-like_sfSUPFAM:SSF144091TMHMM:TMhelixEnsemblPlantsGene:TraesCS1D01G187500EnsemblPlants:TraesCS1D01G187500.1
SEG:seg:::::
Description
No Description!
Coordinates
chr1D:+:258978733..258980103
Molecular Weight (calculated)
35274.6 Da
IEP (calculated)
10.117
GRAVY (calculated)
0.454
Length
323 amino acids
Sequence
(BLAST)
001: MAGSRRDADR KEKAPPAAPP QQQPGREEER EWVPWIVPVF VAANVALFAV AMYANNCPAH ARGRRKCVGA GFLRRFAFQP LSQNPLLGPS SATLQKLGAL
101: VWDKVVHEHQ GWRLVTCIWL HAGVVHLLAN MLSLVLVGLR LEQQFGFVRV GVIYLVSGVG GSVMSSLFIR DNISVGASGA LFGLLGAMLS ELFTNWTIYT
201: NKAAALVTLL FVIAVNLAIG ILPHVDNFAH IGGFLTGFLL GFVLLMRPHY GWAQRYVLPS SVKDVGRKFL AYQWALLAVA SVLVVVGLAV GMAMLFRGVN
301: GNEHCQWCHY LSCVPTARWS CGK
Best Arabidopsis Sequence Match ( AT1G12750.1 )
(BLAST)
001: MRSRDMERGR KHRGDTQWTA WLTPTIVVAN VSIFIVVMYT NDCPKTTTGA NGDCVAKLLR RFSFQPLREN PFLGPSSSTL EKLGALDWKK VVQGNEKWRL
101: ITAMWLHAGI IHLVMNMFDV IIFGIRLEQQ FGFIRIGLIY LISGFGGSIL SALFLQKSIS VGASGALLGL MGAMLSELLT NWTIYKSKLC ALLSFLFIIA
201: INLAIGLLPW VDNFAHIGGL LTGFCLGFIL LMQPQSGWEE FRNSSQYGAR ARSKYNPCQY VLFFVAAVLV VAGLTVGLVM LFDGENGNKH CKWCHRLDCY
301: PTSKWSC
Arabidopsis Description
RBL6RHOMBOID-like protein 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ48]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.