Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 3
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400006495 | |
| PGSC0003DMT400015077 | |
| PGSC0003DMT400050482 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G07250.1 | PGSC0003DMT400006495 | AT3G16310.1 | 21798944 |
| AT5G07250.1 | PGSC0003DMT400015077 | AT5G22290.1 | 21798944 |
| AT5G07250.1 | PGSC0003DMT400050482 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g026080.2.1 | Tomato | plasma membrane | 97.8 | 97.8 |
| VIT_16s0100g00640.t01 | Wine grape | plasma membrane | 74.84 | 73.23 |
| GSMUA_Achr11P... | Banana | cytosol | 73.58 | 69.64 |
| KRH09112 | Soybean | plasma membrane | 71.7 | 69.3 |
| KRH38564 | Soybean | plasma membrane | 70.44 | 67.88 |
| KRG91456 | Soybean | cytosol, golgi, plasma membrane | 69.81 | 67.48 |
| KRH35359 | Soybean | cytosol, golgi, plasma membrane | 69.81 | 67.27 |
| PGSC0003DMT400007890 | Potato | plasma membrane | 68.55 | 66.06 |
| TraesCS5D01G320400.1 | Wheat | plasma membrane | 65.72 | 65.31 |
| TraesCS5A01G314000.1 | Wheat | plasma membrane | 65.72 | 64.91 |
| HORVU5Hr1G080690.2 | Barley | plasma membrane | 65.41 | 64.8 |
| TraesCS5B01G314900.1 | Wheat | plasma membrane | 65.72 | 64.71 |
| Os09t0525900-01 | Rice | plasma membrane | 65.41 | 64.4 |
| CDX98992 | Canola | plasma membrane | 68.24 | 63.82 |
| EER99221 | Sorghum | cytosol, peroxisome, plasma membrane | 64.78 | 63.38 |
| CDX70021 | Canola | plasma membrane | 68.87 | 63.11 |
| Zm00001d006179_P002 | Maize | plasma membrane | 64.78 | 63.0 |
| Zm00001d021231_P002 | Maize | plasma membrane | 64.15 | 62.96 |
| Zm00001d029667_P001 | Maize | plasma membrane | 66.04 | 62.87 |
| Zm00001d029668_P001 | Maize | plasma membrane | 66.04 | 62.87 |
| Os10t0521900-01 | Rice | plasma membrane | 65.41 | 62.65 |
| Os08t0546700-01 | Rice | plasma membrane | 63.52 | 62.54 |
| Bra009279.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 68.24 | 62.54 |
| Os03t0116400-01 | Rice | cytosol, peroxisome, plasma membrane | 63.52 | 62.15 |
| EER94630 | Sorghum | cytosol, golgi, plasma membrane | 65.09 | 61.79 |
| TraesCS1D01G187500.1 | Wheat | plasma membrane | 62.58 | 61.61 |
| AT5G07250.1 | Thale cress | plasma membrane | 66.98 | 61.56 |
| Zm00001d052734_P002 | Maize | plasma membrane | 62.26 | 61.49 |
| TraesCS4A01G179600.1 | Wheat | plasma membrane | 37.11 | 61.46 |
| CDX70020 | Canola | mitochondrion, plasma membrane | 62.58 | 61.42 |
| Bra005930.1-P | Field mustard | plasma membrane | 62.26 | 60.92 |
| TraesCS1A01G188900.1 | Wheat | plasma membrane | 62.58 | 60.86 |
| TraesCS1B01G196600.1 | Wheat | plasma membrane | 62.26 | 60.74 |
| TraesCS7A01G269900.1 | Wheat | plasma membrane | 61.32 | 60.37 |
| TraesCS7D01G270400.1 | Wheat | plasma membrane | 61.95 | 60.06 |
| CDX78286 | Canola | plasma membrane | 61.32 | 60.0 |
| CDX81043 | Canola | plasma membrane | 61.32 | 59.82 |
| TraesCS7B01G168100.1 | Wheat | plasma membrane | 61.64 | 59.76 |
| HORVU1Hr1G048610.3 | Barley | plasma membrane | 61.01 | 59.69 |
| HORVU7Hr1G056630.1 | Barley | plasma membrane | 61.01 | 59.51 |
| EER95642 | Sorghum | cytosol, golgi, plasma membrane | 61.01 | 59.51 |
| TraesCS5A01G526000.1 | Wheat | plasma membrane | 61.01 | 58.43 |
| TraesCS4B01G356600.1 | Wheat | plasma membrane | 61.01 | 58.08 |
| Zm00001d027355_P001 | Maize | plasma membrane | 58.8 | 58.07 |
| TraesCS4D01G350300.1 | Wheat | plasma membrane | 60.38 | 57.66 |
| EES11282 | Sorghum | cytosol | 61.32 | 57.35 |
| Zm00001d002632_P001 | Maize | plasma membrane | 61.32 | 57.35 |
| CDX98993 | Canola | cytosol | 56.29 | 56.29 |
| TraesCS2D01G398500.1 | Wheat | plasma membrane | 59.12 | 55.46 |
| TraesCS2A01G401000.1 | Wheat | plasma membrane | 59.12 | 55.13 |
| TraesCS2B01G419100.1 | Wheat | plasma membrane | 58.49 | 55.03 |
| Os04t0569300-01 | Rice | cytosol | 58.18 | 54.09 |
| Bra009280.1-P | Field mustard | cytosol | 60.38 | 51.47 |
| HORVU4Hr1G086150.3 | Barley | plastid | 61.01 | 50.0 |
| PGSC0003DMT400022764 | Potato | plasma membrane | 59.75 | 49.22 |
| PGSC0003DMT400011238 | Potato | plasma membrane | 55.97 | 45.99 |
| HORVU2Hr1G095170.6 | Barley | mitochondrion | 48.11 | 41.46 |
| HORVU3Hr1G029090.1 | Barley | plastid | 19.81 | 41.45 |
| HORVU0Hr1G006330.1 | Barley | plastid | 19.81 | 41.45 |
| PGSC0003DMT400016755 | Potato | cytosol | 38.99 | 32.29 |
Protein Annotations
| Gene3D:1.20.1540.10 | EntrezGene:102580200 | MapMan:19.4.2.6 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004252 |
| GO:GO:0005575 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009506 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019538 | InterPro:IPR035952 | UniProt:M1B4W3 |
| PFAM:PF01694 | EnsemblPlantsGene:PGSC0003DMG400014321 | PGSC:PGSC0003DMG400014321 | EnsemblPlants:PGSC0003DMT400037141 | PANTHER:PTHR22936 | PANTHER:PTHR22936:SF65 |
| InterPro:Peptidase_S54_rhomboid | InterPro:Peptidase_S54_rhomboid_dom | InterPro:Rhomboid-like_sf | MEROPS:S54.A02 | SUPFAM:SSF144091 | TMHMM:TMhelix |
| UniParc:UPI000294C949 | RefSeq:XP_006353343.1 | SEG:seg | : | : | : |
Description
KOM [Source:PGSC_GENE;Acc:PGSC0003DMG400014321]
Coordinates
chr3:-:42442881..42445704
Molecular Weight (calculated)
35159.5 Da
IEP (calculated)
9.312
GRAVY (calculated)
0.454
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGGDIESRG EKNRGSNHAS SHAVEDTDTP WLSWLIPLFV VANVVMFVIV MYFNNCSKHD QGCVARFLGR FSFQPLRENP LFGPSSSTLE RLGGLEWKKV
101: VHQHQGWRLI TCIWLHAGVI HLIANMLSLV IIGIRLEQQC GFVRIGIIYL LSGIGGSILS SLFIQRNISV GASGALFGLL GAMLSELITN WSIYTNKVCA
201: LLTLLVIVAI NLAVGILPHV DNFAHIGGFL TGFLLGFVLL PRPQLGWMQR RNLPAGVRVN SKYKAYQYGL GLVSLVLLVA GFTIGLVLLF RGVNGYDHCH
301: WCHYLSCVPT SRWKCDGN
101: VHQHQGWRLI TCIWLHAGVI HLIANMLSLV IIGIRLEQQC GFVRIGIIYL LSGIGGSILS SLFIQRNISV GASGALFGLL GAMLSELITN WSIYTNKVCA
201: LLTLLVIVAI NLAVGILPHV DNFAHIGGFL TGFLLGFVLL PRPQLGWMQR RNLPAGVRVN SKYKAYQYGL GLVSLVLLVA GFTIGLVLLF RGVNGYDHCH
301: WCHYLSCVPT SRWKCDGN
001: MANRDVERVG KKNRGANNNY FYEESSGETH WTSWLIPAIV VANLAVFIAV MFVNDCPKKI TGPNKECVAR FLGRFSFQPL KENPLFGPSS STLEKMGALE
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC
Arabidopsis Description
RBL2RHOMBOID-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN1]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.