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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • golgi 1
  • mitochondrion 1
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:golgi, plasma membrane
MultiLoc:golgi
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G340600.1
TraesCS1D01G342600.1
TraesCS2A01G346700.1
TraesCS2B01G365000.1
TraesCS2D01G345400.1
TraesCS3A01G274800.1
TraesCS3A01G313000.1
TraesCS3B01G158900.1
TraesCS3B01G308400.1
TraesCS3D01G141300.1
TraesCS3D01G274500.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G63120.1 TraesCS2A01G346700.1 AT1G27300.1 21798944
AT1G63120.1 TraesCS2B01G365000.1 AT1G27300.1 21798944
AT1G63120.1 TraesCS2D01G345400.1 AT1G27300.1 21798944
AT5G07250.1 TraesCS1A01G340600.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS1D01G342600.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3A01G274800.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3A01G313000.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3B01G158900.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3B01G308400.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3D01G141300.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3D01G274500.1 AT3G16310.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5D01G320400.1 Wheat plasma membrane 99.38 100.0
TraesCS5B01G314900.1 Wheat plasma membrane 99.69 99.38
HORVU5Hr1G080690.2 Barley plasma membrane 97.83 98.13
Os09t0525900-01 Rice plasma membrane 87.89 87.62
EER99221 Sorghum cytosol, peroxisome, plasma membrane 86.34 85.54
Zm00001d021231_P002 Maize plasma membrane 85.71 85.19
Zm00001d006179_P002 Maize plasma membrane 86.02 84.71
TraesCS7A01G269900.1 Wheat plasma membrane 80.12 79.88
GSMUA_Achr2P03320_001 Banana cytosol, golgi, plasma membrane 69.25 69.47
GSMUA_Achr1P07920_001 Banana plasma membrane 68.63 68.85
GSMUA_Achr9P20880_001 Banana plasma membrane 66.46 66.46
PGSC0003DMT400037141 Potato cytosol, golgi, plasma membrane 64.91 65.72
AT1G63120.1 Thale cress cytosol, golgi, plasma membrane 63.98 64.98
VIT_02s0025g04130.t01 Wine grape cytosol, plasma membrane, vacuole 66.15 64.94
Solyc03g026080.2.1 Tomato plasma membrane 63.98 64.78
KRH09112 Soybean plasma membrane 65.53 64.13
KRH38564 Soybean plasma membrane 64.91 63.33
CDY67235 Canola plasma membrane 62.73 63.32
Bra026997.1-P Field mustard cytosol, golgi, plasma membrane 62.73 63.32
VIT_16s0100g00640.t01 Wine grape plasma membrane 63.66 63.08
CDY45976 Canola plasma membrane 62.42 63.01
CDY47350 Canola plasma membrane 61.49 62.86
Bra027622.1-P Field mustard plasma membrane 61.18 62.74
CDX98992 Canola plasma membrane 65.84 62.35
KRG91456 Soybean cytosol, golgi, plasma membrane 63.35 62.01
KRH35359 Soybean cytosol, golgi, plasma membrane 63.35 61.82
CDY49197 Canola plasma membrane 61.18 61.37
Bra009279.1-P Field mustard cytosol, peroxisome, plasma membrane 65.84 61.1
TraesCS4A01G179600.1 Wheat plasma membrane 36.34 60.94
TraesCS5A01G526000.1 Wheat plasma membrane 62.73 60.84
CDX70021 Canola plasma membrane 65.53 60.81
AT5G07250.1 Thale cress plasma membrane 65.22 60.69
Solyc08g080500.2.1 Tomato cytosol, golgi, plasma membrane 62.42 60.36
AT1G12750.4 Thale cress plasma membrane 57.45 60.26
PGSC0003DMT400007890 Potato plasma membrane 61.49 60.0
TraesCS1A01G188900.1 Wheat plasma membrane 60.56 59.63
CDX70020 Canola mitochondrion, plasma membrane 59.63 59.26
Bra019783.1-P Field mustard plasma membrane 55.9 59.21
CDY66606 Canola plasma membrane 55.9 59.21
Bra005930.1-P Field mustard plasma membrane 58.7 58.15
CDX78286 Canola plasma membrane 58.39 57.85
CDX81043 Canola plasma membrane 58.07 57.36
TraesCS4A01G176100.1 Wheat plasma membrane 55.9 56.78
TraesCS2A01G401000.1 Wheat plasma membrane 59.63 56.3
Bra013673.1-P Field mustard plasma membrane 46.89 53.55
CDY53134 Canola plasma membrane 52.17 53.5
CDY41251 Canola plasma membrane 51.86 53.35
CDX98993 Canola cytosol 51.86 52.52
AT4G23070.1 Thale cress plasma membrane 50.93 52.4
CDY60266 Canola plasma membrane 57.14 51.4
Bra009280.1-P Field mustard cytosol 57.76 49.87
TraesCS3A01G071500.1 Wheat plasma membrane 54.35 46.79
Protein Annotations
Gene3D:1.20.1540.10MapMan:19.4.2.6GO:GO:0003674GO:GO:0003824GO:GO:0004252GO:GO:0005575
GO:GO:0006508GO:GO:0008150GO:GO:0008152GO:GO:0016020GO:GO:0016021GO:GO:0016787
GO:GO:0019538InterPro:IPR035952PFAM:PF01694PANTHER:PTHR22936PANTHER:PTHR22936:SF62InterPro:Peptidase_S54_rhomboid
InterPro:Peptidase_S54_rhomboid_domInterPro:Rhomboid-like_sfSUPFAM:SSF144091TMHMM:TMhelixEnsemblPlantsGene:TraesCS5A01G314000EnsemblPlants:TraesCS5A01G314000.1
SEG:seg:::::
Description
No Description!
Coordinates
chr5A:-:524670970..524674026
Molecular Weight (calculated)
35180.4 Da
IEP (calculated)
9.090
GRAVY (calculated)
0.471
Length
322 amino acids
Sequence
(BLAST)
001: MEGGGEGKGR AAPATAAGGG FGGYESAGDR KWWPWLVPTV IVACVAVFVV EMWVNDCPRH GSALGGGCVA GFLRRFSFQP LRENPLLGPS STTLGKMGAL
101: DWNKVVHQHQ GWRLISCIWL HAGLIHLVVN MLSLLFIGIR LEQQFGFVRI GAIYLLSGFG GSVMSALFLR NNYISVGASG ALFGLLGSML SELLMNWTIY
201: SNKVAAIITL LFIIAINVAI GILPHADNFA HIGGFLTGFL LGFVLLARPQ FGWLERSELP HTNQPPKYKP YQYVLWVVAL VLLLVGFTLS LVMLFKGKNG
301: NDGCHWCHYL NCVPTSRWKC DT
Best Arabidopsis Sequence Match ( AT1G63120.1 )
(BLAST)
001: MANRDVERVG KKNRGANNNY FYEESSGETH WTSWLIPAIV VANLAVFIAV MFVNDCPKKI TGPNKECVAR FLGRFSFQPL KENPLFGPSS STLEKMGALE
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC
Arabidopsis Description
RBL2RHOMBOID-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN1]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.