Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- cytosol 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra002403.1-P | |
| Bra006619.1-P | |
| Bra020182.1-P | |
| Bra027174.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G07250.1 | Bra027174.1-P | AT3G16310.1 | 21798944 |
| AT5G07250.1 | Bra002403.1-P | AT5G22290.1 | 21798944 |
| AT5G07250.1 | Bra006619.1-P | AT5G22290.1 | 21798944 |
| AT5G07250.1 | Bra020182.1-P | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70020 | Canola | mitochondrion, plasma membrane | 79.36 | 91.36 |
| CDX98993 | Canola | cytosol | 73.99 | 86.79 |
| Bra009279.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 69.97 | 75.22 |
| AT5G07250.1 | Thale cress | plasma membrane | 65.42 | 70.52 |
| Bra005930.1-P | Field mustard | plasma membrane | 59.25 | 68.0 |
| Solyc03g026080.2.1 | Tomato | plasma membrane | 51.74 | 60.69 |
| PGSC0003DMT400037141 | Potato | cytosol, golgi, plasma membrane | 51.47 | 60.38 |
| VIT_16s0100g00640.t01 | Wine grape | plasma membrane | 52.28 | 60.0 |
| KRG91456 | Soybean | cytosol, golgi, plasma membrane | 52.81 | 59.88 |
| KRH09112 | Soybean | plasma membrane | 52.55 | 59.57 |
| KRH38564 | Soybean | plasma membrane | 52.55 | 59.39 |
| KRH35359 | Soybean | cytosol, golgi, plasma membrane | 52.01 | 58.79 |
| TraesCS5D01G320400.1 | Wheat | plasma membrane | 49.87 | 58.12 |
| TraesCS5A01G314000.1 | Wheat | plasma membrane | 49.87 | 57.76 |
| GSMUA_Achr11P... | Banana | cytosol | 52.01 | 57.74 |
| HORVU5Hr1G080690.2 | Barley | plasma membrane | 49.6 | 57.63 |
| TraesCS5B01G314900.1 | Wheat | plasma membrane | 49.87 | 57.59 |
| Zm00001d052734_P002 | Maize | plasma membrane | 49.6 | 57.45 |
| Os08t0546700-01 | Rice | plasma membrane | 49.33 | 56.97 |
| Os09t0525900-01 | Rice | plasma membrane | 48.53 | 56.04 |
| Os10t0521900-01 | Rice | plasma membrane | 49.6 | 55.72 |
| Os03t0116400-01 | Rice | cytosol, peroxisome, plasma membrane | 48.53 | 55.69 |
| Zm00001d021231_P002 | Maize | plasma membrane | 48.26 | 55.56 |
| Bra026997.1-P | Field mustard | cytosol, golgi, plasma membrane | 47.45 | 55.49 |
| Bra027622.1-P | Field mustard | plasma membrane | 46.65 | 55.41 |
| EER99221 | Sorghum | cytosol, peroxisome, plasma membrane | 48.26 | 55.38 |
| TraesCS4A01G179600.1 | Wheat | plasma membrane | 28.42 | 55.21 |
| TraesCS7D01G270400.1 | Wheat | plasma membrane | 48.53 | 55.18 |
| Zm00001d006179_P002 | Maize | plasma membrane | 48.26 | 55.05 |
| HORVU7Hr1G056630.1 | Barley | plasma membrane | 47.99 | 54.91 |
| TraesCS7B01G168100.1 | Wheat | plasma membrane | 47.99 | 54.57 |
| Zm00001d029667_P001 | Maize | plasma membrane | 48.79 | 54.49 |
| Zm00001d029668_P001 | Maize | plasma membrane | 48.79 | 54.49 |
| TraesCS7A01G269900.1 | Wheat | plasma membrane | 47.19 | 54.49 |
| EER94630 | Sorghum | cytosol, golgi, plasma membrane | 48.53 | 54.03 |
| TraesCS5A01G526000.1 | Wheat | plasma membrane | 47.99 | 53.92 |
| TraesCS1D01G187500.1 | Wheat | plasma membrane | 45.84 | 52.94 |
| TraesCS4D01G350300.1 | Wheat | plasma membrane | 47.19 | 52.85 |
| TraesCS1B01G196600.1 | Wheat | plasma membrane | 46.11 | 52.76 |
| EER95642 | Sorghum | cytosol, golgi, plasma membrane | 46.11 | 52.76 |
| TraesCS4B01G356600.1 | Wheat | plasma membrane | 47.19 | 52.69 |
| HORVU1Hr1G048610.3 | Barley | plasma membrane | 45.84 | 52.62 |
| TraesCS1A01G188900.1 | Wheat | plasma membrane | 45.31 | 51.68 |
| Zm00001d027355_P001 | Maize | plasma membrane | 44.5 | 51.55 |
| Bra019783.1-P | Field mustard | plasma membrane | 41.82 | 51.32 |
| EES11282 | Sorghum | cytosol | 46.65 | 51.18 |
| Bra013673.1-P | Field mustard | plasma membrane | 38.61 | 51.06 |
| Os04t0569300-01 | Rice | cytosol | 46.65 | 50.88 |
| Zm00001d002632_P001 | Maize | plasma membrane | 46.11 | 50.59 |
| TraesCS2B01G419100.1 | Wheat | plasma membrane | 43.97 | 48.52 |
| TraesCS2D01G398500.1 | Wheat | plasma membrane | 43.97 | 48.38 |
| TraesCS2A01G401000.1 | Wheat | plasma membrane | 43.7 | 47.8 |
| HORVU4Hr1G086150.3 | Barley | plastid | 46.65 | 44.85 |
| Bra030374.1-P | Field mustard | plasma membrane | 36.73 | 43.91 |
| Bra028389.1-P | Field mustard | plasma membrane | 46.92 | 43.86 |
| Bra018974.1-P | Field mustard | plasma membrane | 36.73 | 43.49 |
| Bra014862.1-P | Field mustard | cytosol | 43.43 | 38.21 |
| HORVU3Hr1G029090.1 | Barley | plastid | 15.55 | 38.16 |
| HORVU0Hr1G006330.1 | Barley | plastid | 15.55 | 38.16 |
| HORVU2Hr1G095170.6 | Barley | mitochondrion | 35.92 | 36.31 |
| Bra015649.1-P | Field mustard | plasma membrane | 31.1 | 30.05 |
Protein Annotations
| Gene3D:1.20.1540.10 | MapMan:19.4.2.6 | EnsemblPlantsGene:Bra009280 | EnsemblPlants:Bra009280.1 | EnsemblPlants:Bra009280.1-P | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004252 | GO:GO:0005575 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008233 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019538 | InterPro:IPR035952 |
| UniProt:M4CYI3 | PFAM:PF01694 | PANTHER:PTHR22936 | PANTHER:PTHR22936:SF62 | InterPro:Peptidase_S54_rhomboid | InterPro:Peptidase_S54_rhomboid_dom |
| InterPro:Rhomboid-like_sf | SUPFAM:SSF144091 | TMHMM:TMhelix | UniParc:UPI000254379D | SEG:seg | : |
Description
AT5G07250 (E=1e-073) ATRBL3 | ATRBL3 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 3)
Coordinates
chrA10:+:15959378..15960828
Molecular Weight (calculated)
41846.4 Da
IEP (calculated)
8.392
GRAVY (calculated)
0.337
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVVDDMENQ MPAKHHRGIG SRGGEQDGLG PSPRPVVPPL VYSEFGDDDE LSPQWTSWLI PMFVVANVIV FFATMSVNNC PQHSQHCVAT RQVPREILLR
101: ASPGQSSLRP IFSNVYVPSI LTYYILPNHL NCVSTLVYDF NNRLEKLGSL DWFRVVEKHQ AWRLLTCIWL HAGVIHLAIN MLSIVFIGTR LEQQFGFVRI
201: GVIYVMSGMG GSILSSLFIR SGISVGASGA LFGLLGSMLS ELLTNWTIYS NKIAAFLTLL FVIVINMGIG SLPYVDNFAH VGGFLTGFFL GFLLMARPQI
301: KWLERQHMPQ GRRLTSKYKP YQYILWLLSL ALLIAGFLVA LVLLFKGEDG NDHCHWCRYL SCIPTSRWSC DSV
101: ASPGQSSLRP IFSNVYVPSI LTYYILPNHL NCVSTLVYDF NNRLEKLGSL DWFRVVEKHQ AWRLLTCIWL HAGVIHLAIN MLSIVFIGTR LEQQFGFVRI
201: GVIYVMSGMG GSILSSLFIR SGISVGASGA LFGLLGSMLS ELLTNWTIYS NKIAAFLTLL FVIVINMGIG SLPYVDNFAH VGGFLTGFFL GFLLMARPQI
301: KWLERQHMPQ GRRLTSKYKP YQYILWLLSL ALLIAGFLVA LVLLFKGEDG NDHCHWCRYL SCIPTSRWSC DSV
001: MAVGDDDLEN RMSAKDRGIG SRGGDRNRIG PPPLPVALSS STEFGDNALS SRWTSWLVPM FVVANVAVFV VAMFVNNCPN HFESHRLRGH CVAKFLGRLS
101: FEPLRTNPLF GPSSHTLEKL GALEWSKVVE KKEGWRLLTC IWLHAGVIHL GANMLSLVFI GIRLEQQFGF VRIGVIYLLS GIGGSVLSSL FIRNSISVGA
201: SGALFGLLGS MLSELFTNWT IYSNKIAALL TLLFVILINL AIGILPHVDN FAHVGGFVTG FLLGFILLAR PQFKWLAREH MPQGTPLRYK YKTYQYLLWL
301: LSLVLLIAGF VVALLMLFRG ENGNDHCRWC HYLRCVPTSS WRCDDV
101: FEPLRTNPLF GPSSHTLEKL GALEWSKVVE KKEGWRLLTC IWLHAGVIHL GANMLSLVFI GIRLEQQFGF VRIGVIYLLS GIGGSVLSSL FIRNSISVGA
201: SGALFGLLGS MLSELFTNWT IYSNKIAALL TLLFVILINL AIGILPHVDN FAHVGGFVTG FLLGFILLAR PQFKWLAREH MPQGTPLRYK YKTYQYLLWL
301: LSLVLLIAGF VVALLMLFRG ENGNDHCRWC HYLRCVPTSS WRCDDV
Arabidopsis Description
RBL3Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UBV1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.