Factsheet for Bra018974.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
plasma membrane 4
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65908	Canola	plasma membrane	100.0	100.0
CDY40148	Canola	plasma membrane	99.37	99.37
Bra030374.1-P	Field mustard	plasma membrane	92.06	92.95
AT1G52580.1	Thale cress	cytosol, golgi, plasma membrane	89.52	91.26
VIT_09s0002g06570.t01	Wine grape	plasma membrane	55.56	60.55
KRH09741	Soybean	plasma membrane	60.32	60.13
Bra027622.1-P	Field mustard	plasma membrane	46.67	46.82
Bra026997.1-P	Field mustard	cytosol, golgi, plasma membrane	46.03	45.45
Bra013673.1-P	Field mustard	plasma membrane	40.63	45.39
Bra005930.1-P	Field mustard	plasma membrane	46.67	45.23
Bra019783.1-P	Field mustard	plasma membrane	41.9	43.42
Bra009279.1-P	Field mustard	cytosol, peroxisome, plasma membrane	47.62	43.23
Bra028389.1-P	Field mustard	plasma membrane	52.38	41.35
GSMUA_Achr2P08240_001	Banana	plasma membrane	45.4	39.07
Bra009280.1-P	Field mustard	cytosol	43.49	36.73
Bra014862.1-P	Field mustard	cytosol	45.4	33.73
Bra015649.1-P	Field mustard	plasma membrane	34.6	28.24

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	EnsemblPlantsGene:Bra018974	EnsemblPlants:Bra018974.1	EnsemblPlants:Bra018974.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	InterPro:IPR035952
UniProt:M4DR31	PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF64	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom
InterPro:Rhomboid-like_sf	SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI000253E89D	SEG:seg	:

Description

AT1G52580 (E=6e-132) ATRBL5 | ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)

Coordinates

chrA06:-:933204..934717

Molecular Weight (calculated)

35081.6 Da

IEP (calculated)

9.234

GRAVY (calculated)

0.285

Length

315 amino acids

Sequence
(BLAST)

001: MGKRPPIPPD IENGTPPLPP LPPPARPPFR PPIPVPWYAW LVPLIFAANF ITFATTMYVN DCPSRSDNCL LFDVLGRLSF QPIKENMLLG PSIPTLRRLG
101: ALERRLVEEG EKWRLISCIW LHGGLLHLLA NMISLLCIGM RLEQEFGFLR IGALYVISGL GGSIMSCLTD SRGERVSVGA SGALFGLLGA MLSELITNWT
201: IYENKCTSLM TLILIIALNL SVGFLPRVDN SAHCGGFLAG FFLGFVLLLR PQYGYVNPKY IPPGYDVKHR KSRHKCYQHV FRFTSLAILL AGFIAGYTKL
301: LREHTVESVP FRDVN

Best Arabidopsis Sequence Match ( AT1G52580.1 )
(BLAST)

001: MGKRPPIPPD IENGPPPPAR PHFRPPIPVP WVAWLVPLIL AANFVTFATT MYVNDCPARS DECLLFDVLG RLSFQPIKEN MLLGPSIPTL RKLGALERRL
101: VEEGERWRLI SCIWLHGGFL HLMANMISLM CIGMRLEQEF GFMRIGALYV ISGLGGSLVS CLTDSQGERV SVGASGALFG LLGAMLSELI TNWTIYENKC
201: TALMTLILII VLNLSVGFLP RVDNSAHFGG FLAGFFLGFV LLLRPQYGYV NPKYIPPGYD MKHKKSKHKC YQHIFRFTSL AILLAGFIAG YTKLLREHTI
301: QSMPFRDFN

Arabidopsis Description

RBL5RHOMBOID-like protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSR0]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.