Factsheet for Bra028389.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 3
plasma membrane 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47879	Canola	plasma membrane	94.74	99.21
AT2G29050.1	Thale cress	golgi, peroxisome, plasma membrane, plastid	82.71	84.83
VIT_06s0004g04890.t01	Wine grape	plasma membrane	66.92	68.29
KRH10251	Soybean	plasma membrane	63.66	65.3
Os01t0147300-01	Rice	plasma membrane	32.83	64.22
KRH23080	Soybean	plasma membrane	62.91	64.03
GSMUA_Achr5P20070_001	Banana	plasma membrane	32.83	63.9
TraesCS4A01G176100.1	Wheat	plasma membrane	49.62	62.46
Bra026997.1-P	Field mustard	cytosol, golgi, plasma membrane	49.12	61.44
Bra027622.1-P	Field mustard	plasma membrane	47.87	60.83
TraesCS3D01G070700.1	Wheat	mitochondrion, plasma membrane	45.36	59.34
Bra019783.1-P	Field mustard	plasma membrane	44.11	57.89
Os11t0704800-01	Rice	plasma membrane	54.14	57.75
TraesCS3B01G085300.1	Wheat	plasma membrane	54.14	57.75
TraesCS3A01G071500.1	Wheat	plasma membrane	53.88	57.49
HORVU4Hr1G027850.1	Barley	peroxisome	53.38	56.2
Bra005930.1-P	Field mustard	plasma membrane	45.61	56.0
TraesCS4D01G136600.2	Wheat	plasma membrane	52.88	55.53
Bra009279.1-P	Field mustard	cytosol, peroxisome, plasma membrane	48.12	55.33
TraesCS4B01G141600.1	Wheat	plasma membrane	52.88	54.81
GSMUA_Achr5P20060_001	Banana	cytosol	7.52	54.55
Bra030374.1-P	Field mustard	plasma membrane	41.6	53.21
Bra013673.1-P	Field mustard	plasma membrane	37.09	52.48
Bra018974.1-P	Field mustard	plasma membrane	41.35	52.38
EES00318	Sorghum	golgi, peroxisome, plasma membrane	55.14	52.26
Zm00001d048606_P001	Maize	cytosol, nucleus, plasma membrane	48.87	48.63
Bra009280.1-P	Field mustard	cytosol	43.86	46.92
OQU84103	Sorghum	golgi, peroxisome, plasma membrane, plastid	49.87	46.17
Bra014862.1-P	Field mustard	cytosol	48.12	45.28
Zm00001d039870_P002	Maize	plasma membrane	55.64	44.22
Bra015649.1-P	Field mustard	plasma membrane	36.84	38.08

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	EnsemblPlantsGene:Bra028389	EnsemblPlants:Bra028389.1	EnsemblPlants:Bra028389.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	InterPro:IPR035952	UniProt:M4EHX4	PFAM:PF01694
PANTHER:PTHR22936	PANTHER:PTHR22936:SF46	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom	InterPro:Rhomboid-like_sf	SUPFAM:SSF144091
TMHMM:TMhelix	UniParc:UPI00025431D4	SEG:seg	:	:	:

Description

AT2G29050 (E=3e-114) ATRBL1 | ATRBL1 (Arabidopsis thaliana Rhomboid-like 1)

Coordinates

chrA02:+:16965..18560

Molecular Weight (calculated)

44407.8 Da

IEP (calculated)

9.633

GRAVY (calculated)

0.323

Length

399 amino acids

Sequence
(BLAST)

001: MSREGLEIKV VDPPPPVSNV SAARSSPGGR QRASFAEFRP FKLWFPWLVP AIVAANIVLF AVSMFINDCP KNSQKCSARF LGRFAFQPMK ENPLLGPSSS
101: TWVSLKLSTF WLLTLRGSDL VLEKMGALEV TMVVDKHQVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS LLSSLFNREG
201: ISVGASGALF GLLGAMLSEL LTNWTIYANK FAALLTLIFI IAINLAVGIL PHVDNFAHLG GFTSGFLLGF VFLIRPQYGY FNQRNNPRGY AAPSAKSKHK
301: PYQYVLWITS LLLLIAGYTV GLIVLLRGTD LNKHCPWCHY LSCMPTSLWN CKSQNMYCKS SQIGKQMNLT CIANGRTEMY TLGNENQSQI QQMCSQLCS

Best Arabidopsis Sequence Match ( AT2G29050.1 )
(BLAST)

001: MARDRREGLE IKVVNPPAAA TNNVAVETSP ATATRRRRQQ QRASFAEFRP FKLWFPWLVP AIVVANIALF AISMFINNCP KNSAYCLARF LGRFAFQPMK
101: ENPLLGPSSL TLEKMGALDV SMVVHKHEVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS LLSSLFNRAG ISVGASGALF
201: GLLGAMLSEL LTNWTIYANK FAALLTLIFI IAINLAVGIL PHVDNFAHLG GFTSGFLLGF VFLIRPQYGY FNQRNNPRGY AAPSAKSKHK PYQYVLWITS
301: LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS CKSQNVYCES SQIGQQMNLT CITNGKTEMY KLSNDIPSRI QQLCSQLCR

Arabidopsis Description

RBL1RHOMBOID-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQX7]
SUBAcon: [peroxisome,golgi,plastid,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.