Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol | 45.45 | 25.0 |
| GSMUA_Achr11P... | Banana | cytosol | 80.0 | 13.1 |
| GSMUA_Achr2P03320_001 | Banana | cytosol, golgi, plasma membrane | 69.09 | 11.84 |
| GSMUA_Achr1P07920_001 | Banana | plasma membrane | 69.09 | 11.84 |
| GSMUA_Achr9P20880_001 | Banana | plasma membrane | 63.64 | 10.87 |
| KRH23080 | Soybean | plasma membrane | 65.45 | 9.18 |
| KRH10251 | Soybean | plasma membrane | 63.64 | 9.0 |
| GSMUA_Achr6P34110_001 | Banana | plasma membrane | 61.82 | 8.72 |
| VIT_06s0004g04890.t01 | Wine grape | plasma membrane | 61.82 | 8.7 |
| CDY47879 | Canola | plasma membrane | 54.55 | 7.87 |
| CDY39528 | Canola | plasma membrane | 52.73 | 7.57 |
| Bra028389.1-P | Field mustard | plasma membrane | 54.55 | 7.52 |
| AT2G29050.1 | Thale cress | golgi, peroxisome, plasma membrane, plastid | 50.91 | 7.2 |
| GSMUA_Achr10P... | Banana | cytosol, peroxisome, plasma membrane | 58.18 | 6.37 |
| GSMUA_Achr2P08240_001 | Banana | plasma membrane | 30.91 | 4.64 |
| GSMUA_Achr10P... | Banana | plasma membrane | 10.91 | 2.46 |
| GSMUA_Achr5P20070_001 | Banana | plasma membrane | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P20060_001 | EnsemblPlants:GSMUA_Achr5T20060_001 | EnsemblPlantsGene:GSMUA_Achr5G20060_001 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004252 |
| GO:GO:0005575 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019538 | InterPro:Peptidase_S54_rhomboid | PANTHER:PTHR22936 | PANTHER:PTHR22936:SF63 |
| UniParc:UPI00029691F7 | UniProt:M0T035 | MapMan:35.2 | : | : | : |
Description
OsRhmbd16 - Putative Rhomboid homologue, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G20060_001]
Coordinates
chr5:+:21697938..21698863
Molecular Weight (calculated)
6269.5 Da
IEP (calculated)
9.368
GRAVY (calculated)
-0.440
Length
55 amino acids
Sequence
(BLAST)
(BLAST)
1: MYVNDCSGHR NPYGSCVTGF LRRFSFQPLR ENRLLGPSSS TLQKLGALEW DKVVH
001: MRSRDMERGR KHRGDTQWTA WLTPTIVVAN VSIFIVVMYT NDCPKTTTGA NGDCVAKLLR RFSFQPLREN PFLGPSSSTL EKLGALDWKK VVQGNEKWRL
101: ITAMWLHAGI IHLVMNMFDV IIFGIRLEQQ FGFIRIGLIY LISGFGGSIL SALFLQKSIS VGASGALLGL MGAMLSELLT NWTIYKSKVC FLG
101: ITAMWLHAGI IHLVMNMFDV IIFGIRLEQQ FGFIRIGLIY LISGFGGSIL SALFLQKSIS VGASGALLGL MGAMLSELLT NWTIYKSKVC FLG
Arabidopsis Description
RBL6RHOMBOID-like protein 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ48]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.