Factsheet for GSMUA_Achr10P13670_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P20070_001	Banana	plasma membrane	26.29	64.39
GSMUA_Achr2P03320_001	Banana	cytosol, golgi, plasma membrane	37.45	58.57
GSMUA_Achr5P20060_001	Banana	cytosol	6.37	58.18
GSMUA_Achr1P07920_001	Banana	plasma membrane	36.65	57.32
GSMUA_Achr6P34110_001	Banana	plasma membrane	44.02	56.67
GSMUA_Achr11P...	Banana	cytosol	37.45	55.95
GSMUA_Achr10P...	Banana	plasma membrane	26.89	55.33
GSMUA_Achr9P20880_001	Banana	plasma membrane	35.26	54.97
GSMUA_Achr10P...	Banana	cytosol	10.16	51.0
GSMUA_Achr2P08240_001	Banana	plasma membrane	27.29	37.43

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005488
GO:GO:0005575	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr10G13670_001	EnsemblPlants:GSMUA_Achr10P13670_001
EnsemblPlants:GSMUA_Achr10T13670_001	InterPro:IPR035952	UniProt:M0RHZ3	InterPro:Metalthion_15p	PFAM:PF01439	PFAM:PF01694
PANTHER:PTHR22936	PANTHER:PTHR22936:SF46	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom	InterPro:Rhomboid-like_sf	SUPFAM:SSF144091
TMHMM:TMhelix	UniParc:UPI000295168C	SEG:seg	:	:	:

Description

OsRhmbd18 - Putative Rhomboid homologue, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G13670_001]

Coordinates

chr10:-:22197761..22204356

Molecular Weight (calculated)

54113.9 Da

IEP (calculated)

8.377

GRAVY (calculated)

0.100

Length

502 amino acids

Sequence
(BLAST)

001: MGKESASAAA REDEAKLQPW RGDGGDAHQH EIDPPHPVAA PPTARAKPPQ RQRDERWRPW LVPTIFVANV AMFVITMYVN DCRKNNSVRS CVLPSLGRFS
101: FEPLKQNPLL GPSAKTLQKM GGLVVDKVVH GHQGWRLISC IWLHGGVIHL LANMLCLLLI GIRLEQEFGF VRIGPLYVIA GVGGSLLSAL FVQASVSVGA
201: SGALFGLLGA MLSELITNWT IYANKFAALI SLILIVSINL GLGILPHIDN FAHIGGFITG FLLGFVLLIR PQYGYRSQKY NPLGYNGPAK NKHMIYQYVL
301: WVASAILLIV GLTVSLILLF RGFNGNDHCS WCHYLSCVPT SKWSCKQGTE SCQVFESGNQ WNITCQDSGR SRIFINATQS MDDLCYQLCR GAINRSSSSP
401: PYLKPQQEKL SRLDRGVQKM SCCGGNCGCT SGCKCGSGCG GCSMYPDLGG ERGTTTASII NLGAMTGSVE GFEMAAGSEG GGCNCSQCKC SGKCSCSCCG
501: CN

Best Arabidopsis Sequence Match ( AT2G29050.1 )
(BLAST)

001: MARDRREGLE IKVVNPPAAA TNNVAVETSP ATATRRRRQQ QRASFAEFRP FKLWFPWLVP AIVVANIALF AISMFINNCP KNSAYCLARF LGRFAFQPMK
101: ENPLLGPSSL TLEKMGALDV SMVVHKHEVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS LLSSLFNRAG ISVGASGALF
201: GLLGAMLSEL LTNWTIYANK FAALLTLIFI IAINLAVGIL PHVDNFAHLG GFTSGFLLGF VFLIRPQYGY FNQRNNPRGY AAPSAKSKHK PYQYVLWITS
301: LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS CKSQNVYCES SQIGQQMNLT CITNGKTEMY KLSNDIPSRI QQLCSQLCR

Arabidopsis Description

RBL1RHOMBOID-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQX7]
SUBAcon: [peroxisome,golgi,plastid,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.