Factsheet for GSMUA_Achr6P34110_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	plasma membrane	44.87	71.72
TraesCS4A01G176100.1	Wheat	plasma membrane	54.36	66.88
GSMUA_Achr5P20070_001	Banana	plasma membrane	34.87	66.34
Os11t0704800-01	Rice	plasma membrane	60.51	63.1
GSMUA_Achr5P20060_001	Banana	cytosol	8.72	61.82
HORVU4Hr1G027850.1	Barley	peroxisome	60.0	61.74
TraesCS4D01G136600.2	Wheat	plasma membrane	60.0	61.58
GSMUA_Achr2P03320_001	Banana	cytosol, golgi, plasma membrane	50.26	61.06
GSMUA_Achr1P07920_001	Banana	plasma membrane	50.0	60.75
TraesCS4B01G141600.1	Wheat	plasma membrane	59.74	60.52
GSMUA_Achr11P...	Banana	cytosol	50.77	58.93
GSMUA_Achr9P20880_001	Banana	plasma membrane	48.46	58.7
GSMUA_Achr10P...	Banana	cytosol	14.62	57.0
Zm00001d048606_P001	Maize	cytosol, nucleus, plasma membrane	53.85	52.37
OQU84103	Sorghum	golgi, peroxisome, plasma membrane, plastid	55.64	50.35
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plasma membrane	56.67	44.02
GSMUA_Achr2P08240_001	Banana	plasma membrane	38.72	41.26

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G34110_001	EnsemblPlants:GSMUA_Achr6P34110_001	EnsemblPlants:GSMUA_Achr6T34110_001	InterPro:IPR035952
UniProt:M0TCK4	PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF46	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom
InterPro:Rhomboid-like_sf	SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI0002949BAD	SEG:seg	:

Description

OsRhmbd18 - Putative Rhomboid homologue, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G34110_001]

Coordinates

chr6:+:32919709..32927542

Molecular Weight (calculated)

42667.6 Da

IEP (calculated)

8.169

GRAVY (calculated)

0.448

Length

390 amino acids

Sequence
(BLAST)

001: MGRESGASEI EIKVQGLQGD NDLNPAVSPF PASQPPGCRG LPPPEHRPFR RWTPWLVPAF VLANLVVFAV IMYENDCPKT YMGDCVAVFL GRFAFQPLKE
101: NPLFGPSSST LEKMGALDVR KVVHEHQGWR LISCIWLHAG VIHVLANMLS LLLIGIRLEQ EFGFARIGLL YAISGFGGSL MSALFIKSSI SVGASGALFG
201: LLGGMLSELL TNWTIYTNKV ILETLFTLVL IIAINLAVGV LPHVDNFAHI GGFVSGFLLG FVLLIRPHFG WVAQKNVPPG YLATPVKHKH KLYQYILWII
301: AAILLIVGFT IGILMLFRGV NANDYCSWCH YLSCVPTSIR SCSSSTISCL SSQEGNSLNL MCGGNRRARS YLLPNATEAQ IEELCSQLCS

Best Arabidopsis Sequence Match ( AT2G29050.1 )
(BLAST)

001: MARDRREGLE IKVVNPPAAA TNNVAVETSP ATATRRRRQQ QRASFAEFRP FKLWFPWLVP AIVVANIALF AISMFINNCP KNSAYCLARF LGRFAFQPMK
101: ENPLLGPSSL TLEKMGALDV SMVVHKHEVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS LLSSLFNRAG ISVGASGALF
201: GLLGAMLSEL LTNWTIYANK FAALLTLIFI IAINLAVGIL PHVDNFAHLG GFTSGFLLGF VFLIRPQYGY FNQRNNPRGY AAPSAKSKHK PYQYVLWITS
301: LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS CKSQNVYCES SQIGQQMNLT CITNGKTEMY KLSNDIPSRI QQLCSQLCR

Arabidopsis Description

RBL1RHOMBOID-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQX7]
SUBAcon: [peroxisome,golgi,plastid,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.