Factsheet for GSMUA_Achr9P20880_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P03320_001	Banana	cytosol, golgi, plasma membrane	85.09	85.36
GSMUA_Achr1P07920_001	Banana	plasma membrane	80.43	80.69
GSMUA_Achr5P20070_001	Banana	plasma membrane	43.48	68.29
Zm00001d021231_P002	Maize	plasma membrane	67.39	66.98
TraesCS5D01G320400.1	Wheat	plasma membrane	66.46	66.88
Os09t0525900-01	Rice	plasma membrane	67.08	66.87
GSMUA_Achr11P...	Banana	cytosol	69.57	66.67
HORVU5Hr1G080690.2	Barley	plasma membrane	66.46	66.67
TraesCS5B01G314900.1	Wheat	plasma membrane	66.77	66.56
Zm00001d052734_P002	Maize	plasma membrane	66.46	66.46
TraesCS5A01G314000.1	Wheat	plasma membrane	66.46	66.46
Zm00001d006179_P002	Maize	plasma membrane	67.08	66.06
EER99221	Sorghum	cytosol, peroxisome, plasma membrane	66.46	65.85
Os08t0546700-01	Rice	plasma membrane	65.84	65.63
TraesCS7A01G269900.1	Wheat	plasma membrane	65.22	65.02
TraesCS7D01G270400.1	Wheat	plasma membrane	65.22	64.02
TraesCS7B01G168100.1	Wheat	plasma membrane	65.22	64.02
HORVU7Hr1G056630.1	Barley	plasma membrane	64.6	63.8
GSMUA_Achr5P20060_001	Banana	cytosol	10.87	63.64
GSMUA_Achr6P34110_001	Banana	plasma membrane	58.7	48.46
GSMUA_Achr10P...	Banana	plasma membrane	35.4	46.72
GSMUA_Achr10P...	Banana	cytosol	12.42	40.0
GSMUA_Achr2P08240_001	Banana	plasma membrane	43.79	38.52
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plasma membrane	54.97	35.26

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr9G20880_001	EnsemblPlants:GSMUA_Achr9P20880_001	EnsemblPlants:GSMUA_Achr9T20880_001	InterPro:IPR035952
UniProt:M0U247	PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF62	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom
InterPro:Rhomboid-like_sf	SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI000296AA7F	SEG:seg	:

Description

OsRhmbd16 - Putative Rhomboid homologue, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G20880_001]

Coordinates

chr9:-:25321806..25324287

Molecular Weight (calculated)

35752.1 Da

IEP (calculated)

8.573

GRAVY (calculated)

0.509

Length

322 amino acids

Sequence
(BLAST)

001: MADVETDRDG AGKRPRGGRA YGHGPAEAAE RAWTPWLVPV LLVAFVAVFV VEMYVNNCPD HPQPFGRCVA RFLHRFSFQP IRQNPLLGPS SSTLEKMGAL
101: QWNNVVYQNQ GWRLVTCIWL HAGLIHLLAN LFSLLFIGVR LEQQFGFVRI GVIYLLSGFG GSVLSALLLM NNISVGASGA LFGLLGAMFS ELIINWTIYS
201: NRVAALLTLL VIIIINLGIG LFPHVDNIAH IGGFVSGFLL GFVLLIQPRV RWMERDDLPP SAQVTSKYKA YQCVLWVIAL LLLIAGFAIS LVMLFRGVNG
301: NDHCHWCRYL NCVPTSRWSC ED

Best Arabidopsis Sequence Match ( AT5G07250.1 )
(BLAST)

001: MAVGDDDLEN RMSAKDRGIG SRGGDRNRIG PPPLPVALSS STEFGDNALS SRWTSWLVPM FVVANVAVFV VAMFVNNCPN HFESHRLRGH CVAKFLGRLS
101: FEPLRTNPLF GPSSHTLEKL GALEWSKVVE KKEGWRLLTC IWLHAGVIHL GANMLSLVFI GIRLEQQFGF VRIGVIYLLS GIGGSVLSSL FIRNSISVGA
201: SGALFGLLGS MLSELFTNWT IYSNKIAALL TLLFVILINL AIGILPHVDN FAHVGGFVTG FLLGFILLAR PQFKWLAREH MPQGTPLRYK YKTYQYLLWL
301: LSLVLLIAGF VVALLMLFRG ENGNDHCRWC HYLRCVPTSS WRCDDV

Arabidopsis Description

RBL3Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UBV1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.