Factsheet for HORVU5Hr1G080690.2

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G076010.1
HORVU2Hr1G084420.1
HORVU3Hr1G026980.2
HORVU3Hr1G071060.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63120.1	HORVU2Hr1G084420.1	AT1G27300.1	21798944
AT5G07250.1	HORVU1Hr1G076010.1	AT3G16310.1	21798944
AT5G07250.1	HORVU3Hr1G026980.2	AT3G16310.1	21798944
AT5G07250.1	HORVU3Hr1G071060.1	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G320400.1	Wheat	plasma membrane	98.13	98.44
TraesCS5B01G314900.1	Wheat	plasma membrane	98.44	97.83
TraesCS5A01G314000.1	Wheat	plasma membrane	98.13	97.83
Os09t0525900-01	Rice	plasma membrane	88.16	87.62
EER99221	Sorghum	cytosol, peroxisome, plasma membrane	87.54	86.46
Zm00001d021231_P002	Maize	plasma membrane	87.23	86.42
Zm00001d006179_P002	Maize	plasma membrane	87.54	85.93
HORVU7Hr1G056630.1	Barley	plasma membrane	79.75	78.53
GSMUA_Achr2P03320_001	Banana	cytosol, golgi, plasma membrane	69.16	69.16
GSMUA_Achr1P07920_001	Banana	plasma membrane	68.54	68.54
GSMUA_Achr9P20880_001	Banana	plasma membrane	66.67	66.46
PGSC0003DMT400037141	Potato	cytosol, golgi, plasma membrane	64.8	65.41
AT1G63120.1	Thale cress	cytosol, golgi, plasma membrane	64.17	64.98
VIT_02s0025g04130.t01	Wine grape	cytosol, plasma membrane, vacuole	66.36	64.94
Solyc03g026080.2.1	Tomato	plasma membrane	63.86	64.47
KRH09112	Soybean	plasma membrane	66.04	64.44
KRH38564	Soybean	plasma membrane	65.42	63.64
Bra026997.1-P	Field mustard	cytosol, golgi, plasma membrane	62.93	63.32
CDY67235	Canola	plasma membrane	62.93	63.32
CDY45976	Canola	plasma membrane	62.62	63.01
VIT_16s0100g00640.t01	Wine grape	plasma membrane	63.55	62.77
CDY47350	Canola	plasma membrane	61.37	62.54
Bra027622.1-P	Field mustard	plasma membrane	61.06	62.42
CDX98992	Canola	plasma membrane	65.73	62.06
KRG91456	Soybean	cytosol, golgi, plasma membrane	63.24	61.7
KRH35359	Soybean	cytosol, golgi, plasma membrane	63.24	61.52
CDY49197	Canola	plasma membrane	61.37	61.37
Bra009279.1-P	Field mustard	cytosol, peroxisome, plasma membrane	65.73	60.81
CDX70021	Canola	plasma membrane	65.42	60.52
AT5G07250.1	Thale cress	plasma membrane	65.11	60.4
Solyc08g080500.2.1	Tomato	cytosol, golgi, plasma membrane	62.62	60.36
AT1G12750.4	Thale cress	plasma membrane	57.63	60.26
PGSC0003DMT400007890	Potato	plasma membrane	61.68	60.0
CDY66606	Canola	plasma membrane	56.07	59.21
Bra019783.1-P	Field mustard	plasma membrane	56.07	59.21
HORVU1Hr1G048610.3	Barley	plasma membrane	59.81	59.08
CDX70020	Canola	mitochondrion, plasma membrane	59.5	58.95
Bra005930.1-P	Field mustard	plasma membrane	58.57	57.85
CDX78286	Canola	plasma membrane	58.26	57.54
CDX81043	Canola	plasma membrane	57.94	57.06
Bra013673.1-P	Field mustard	plasma membrane	47.35	53.9
CDY41251	Canola	plasma membrane	52.34	53.67
CDY53134	Canola	plasma membrane	52.34	53.5
AT4G23070.1	Thale cress	plasma membrane	51.09	52.4
CDX98993	Canola	cytosol	51.71	52.2
HORVU4Hr1G086150.3	Barley	plastid	62.31	51.55
CDY60266	Canola	plasma membrane	57.32	51.4
HORVU4Hr1G027850.1	Barley	peroxisome	60.44	51.19
Bra009280.1-P	Field mustard	cytosol	57.63	49.6
HORVU2Hr1G095170.6	Barley	mitochondrion	47.98	41.73
HORVU3Hr1G029090.1	Barley	plastid	18.38	38.82
HORVU0Hr1G006330.1	Barley	plastid	18.38	38.82

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:HORVU5Hr1G080690	EnsemblPlants:HORVU5Hr1G080690.2	InterPro:IPR035952	UniProt:M0YUH2
PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF62	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom	InterPro:Rhomboid-like_sf
SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI000296B692	SEG:seg	:	:

Description

Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:M0YUH2]

Coordinates

chrchr5H:-:561954353..561958001

Molecular Weight (calculated)

35089.3 Da

IEP (calculated)

9.090

GRAVY (calculated)

0.470

Length

321 amino acids

Sequence
(BLAST)

001: MEGGGDGKGR AATAAGGGGF GGYESAGDRK WWPWLVPTVI VACVAVFVVE MWVNDCPRHG SALGGGCVAG FLRRFSFQPL RENPLLGPSS TTLGKMGALD
101: WNKVVHQHQG WRLISCIWLH AGLIHLVVNM LSLLFIGIRL EQQFGFVRIG AIYLLSGFGG SVMSALFLRN NYISVGASGA LFGLLGSMLS ELLMNWTIYS
201: NKVAAIITLL FIIAINVAIG ILPHADNFAH IGGFLTGFLL GFVLLARPQF GWLERSELPH TNQPPKYKPY QYVLWVVAFV LLLVGFTISL VMLFKGKNGN
301: DGCHWCHYLN CVPTSRWKCD T

Best Arabidopsis Sequence Match ( AT1G63120.1 )
(BLAST)

001: MANRDVERVG KKNRGANNNY FYEESSGETH WTSWLIPAIV VANLAVFIAV MFVNDCPKKI TGPNKECVAR FLGRFSFQPL KENPLFGPSS STLEKMGALE
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC

Arabidopsis Description

RBL2RHOMBOID-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN1]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.