CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
plasma membrane 4
mitochondrion 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH09922
KRH22653
KRH23409
KRH26664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07250.1	KRH09922	AT3G16310.1	21798944
AT5G07250.1	KRH23409	AT3G16310.1	21798944
AT5G07250.1	KRH22653	AT5G22290.1	21798944
AT5G07250.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09112	Soybean	plasma membrane	95.76	96.05
KRG91456	Soybean	cytosol, golgi, plasma membrane	78.18	78.42
KRH35359	Soybean	cytosol, golgi, plasma membrane	77.27	77.27
PGSC0003DMT400037141	Potato	cytosol, golgi, plasma membrane	67.88	70.44
Solyc03g026080.2.1	Tomato	plasma membrane	67.88	70.44
VIT_16s0100g00640.t01	Wine grape	plasma membrane	67.58	68.62
Os08t0546700-01	Rice	plasma membrane	64.24	65.63
Os09t0525900-01	Rice	plasma membrane	64.24	65.63
HORVU5Hr1G080690.2	Barley	plasma membrane	63.64	65.42
TraesCS5D01G320400.1	Wheat	plasma membrane	63.33	65.31
Zm00001d052734_P002	Maize	plasma membrane	63.64	65.22
TraesCS5A01G314000.1	Wheat	plasma membrane	63.33	64.91
GSMUA_Achr11P...	Banana	cytosol	66.06	64.88
TraesCS5B01G314900.1	Wheat	plasma membrane	63.33	64.71
Zm00001d021231_P002	Maize	plasma membrane	63.33	64.51
TraesCS7A01G269900.1	Wheat	plasma membrane	62.12	63.47
Zm00001d006179_P002	Maize	plasma membrane	62.73	63.3
EER99221	Sorghum	cytosol, peroxisome, plasma membrane	62.12	63.08
AT5G07250.1	Thale cress	plasma membrane	66.06	63.01
CDX70020	Canola	mitochondrion, plasma membrane	61.82	62.96
Os10t0521900-01	Rice	plasma membrane	63.33	62.95
CDX98992	Canola	plasma membrane	64.85	62.94
Zm00001d029667_P001	Maize	plasma membrane	63.64	62.87
Zm00001d029668_P001	Maize	plasma membrane	63.64	62.87
Os03t0116400-01	Rice	cytosol, peroxisome, plasma membrane	61.82	62.77
Bra009279.1-P	Field mustard	cytosol, peroxisome, plasma membrane	65.76	62.54
TraesCS7B01G168100.1	Wheat	plasma membrane	62.12	62.5
EER94630	Sorghum	cytosol, golgi, plasma membrane	63.33	62.39
HORVU7Hr1G056630.1	Barley	plasma membrane	61.52	62.27
CDX70021	Canola	plasma membrane	65.45	62.25
TraesCS7D01G270400.1	Wheat	plasma membrane	61.82	62.2
TraesCS4A01G179600.1	Wheat	plasma membrane	36.06	61.98
CDX81043	Canola	plasma membrane	60.61	61.35
TraesCS1D01G187500.1	Wheat	plasma membrane	60.0	61.3
CDX78286	Canola	plasma membrane	60.3	61.23
Bra005930.1-P	Field mustard	plasma membrane	59.7	60.62
TraesCS1B01G196600.1	Wheat	plasma membrane	59.7	60.43
TraesCS1A01G188900.1	Wheat	plasma membrane	59.7	60.24
EES11282	Sorghum	cytosol	61.52	59.71
HORVU1Hr1G048610.3	Barley	plasma membrane	58.79	59.69
EER95642	Sorghum	cytosol, golgi, plasma membrane	58.79	59.51
Zm00001d027355_P001	Maize	plasma membrane	57.58	59.01
TraesCS5A01G526000.1	Wheat	plasma membrane	58.79	58.43
TraesCS4B01G356600.1	Wheat	plasma membrane	58.79	58.08
TraesCS4D01G350300.1	Wheat	plasma membrane	58.18	57.66
Zm00001d002632_P001	Maize	plasma membrane	59.09	57.35
TraesCS2B01G419100.1	Wheat	plasma membrane	58.48	57.1
TraesCS2D01G398500.1	Wheat	plasma membrane	58.18	56.64
TraesCS2A01G401000.1	Wheat	plasma membrane	58.48	56.6
CDX98993	Canola	cytosol	54.24	56.29
Os04t0569300-01	Rice	cytosol	57.88	55.85
Bra009280.1-P	Field mustard	cytosol	59.39	52.55
KRH10251	Soybean	plasma membrane	60.91	51.67
KRH23080	Soybean	plasma membrane	60.91	51.28
KRG99546	Soybean	plasma membrane	59.09	50.78
KRH66050	Soybean	plasma membrane	58.48	50.13
HORVU4Hr1G086150.3	Barley	plastid	58.79	50.0
KRH09741	Soybean	plasma membrane	47.27	49.37
KRH49106	Soybean	plasma membrane	38.48	47.39
KRG99955	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	54.85	45.71
HORVU2Hr1G095170.6	Barley	mitochondrion	48.79	43.63
KRH64762	Soybean	plasma membrane	42.73	38.32
HORVU3Hr1G029090.1	Barley	plastid	17.58	38.16
HORVU0Hr1G006330.1	Barley	plastid	17.58	38.16
KRH53148	Soybean	plasma membrane	43.03	38.07

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	EMBL:ACUP02005850	EnsemblPlantsGene:GLYMA_09G143800	GO:GO:0003674	GO:GO:0003824
GO:GO:0004252	GO:GO:0005575	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	UniProt:I1L3B4	InterPro:IPR035952
EnsemblPlants:KRH38564	ProteinID:KRH38564	ProteinID:KRH38564.1	PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF65
InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom	InterPro:Rhomboid-like_sf	SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI0002338773
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:35754163..35757704

Molecular Weight (calculated)

36854.2 Da

IEP (calculated)

8.830

GRAVY (calculated)

0.489

Length

330 amino acids

Sequence
(BLAST)

001: MSSSTIRRDL ESGGANKNIN NISYSAAPTS YVYDPEVHWT SWLVPLFVAV NVVVFFVVMY VNDCPRKNLG FEGDCVARFL GRFSFQPLRE NPLFGPSSST
101: LTKMGALRWD DVVNHHQAWR LVTCIWLHAG VVHLAANMLS LVFIGIRLEQ QFGFVRIGII YLLSGFGGSV LSSLFIRNNI SVGASGALFG LLGAMLSELI
201: TNWSIYTNKA AALFTLLFII VINLAIGMLP HVDNFAHIGG FLSGFLLGFI LLLRPQFGWL EQQRLHAGVH LKSKYKAYQY VLWIVSAILL IVGLSIALVM
301: LFRGESGYDH CHWCHYLTCV PTSKWKCNDN

Best Arabidopsis Sequence Match ( AT1G63120.1 )
(BLAST)

001: MANRDVERVG KKNRGANNNY FYEESSGETH WTSWLIPAIV VANLAVFIAV MFVNDCPKKI TGPNKECVAR FLGRFSFQPL KENPLFGPSS STLEKMGALE
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC

Arabidopsis Description

RBL2RHOMBOID-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN1]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.