Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 5
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
28056797
|
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0200500-01 | |
| Os02t0509600-01 | |
| Os05t0520100-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G63120.1 | Os02t0509600-01 | AT1G27300.1 | 21798944 |
| AT5G07250.1 | Os01t0200500-01 | AT3G16310.1 | 21798944 |
| AT5G07250.1 | Os05t0520100-00 | AT3G16310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER94630 | Sorghum | cytosol, golgi, plasma membrane | 86.45 | 85.67 |
| Zm00001d029668_P001 | Maize | plasma membrane | 84.34 | 83.83 |
| Zm00001d029667_P001 | Maize | plasma membrane | 84.34 | 83.83 |
| TraesCS1B01G196600.1 | Wheat | plasma membrane | 77.71 | 79.14 |
| TraesCS1D01G187500.1 | Wheat | plasma membrane | 76.81 | 78.95 |
| TraesCS1A01G188900.1 | Wheat | plasma membrane | 77.71 | 78.9 |
| HORVU1Hr1G048610.3 | Barley | plasma membrane | 75.6 | 77.23 |
| Os03t0116400-01 | Rice | cytosol, peroxisome, plasma membrane | 74.4 | 76.0 |
| Solyc08g080500.2.1 | Tomato | cytosol, golgi, plasma membrane | 65.66 | 65.47 |
| Solyc03g026080.2.1 | Tomato | plasma membrane | 62.65 | 65.41 |
| PGSC0003DMT400037141 | Potato | cytosol, golgi, plasma membrane | 62.65 | 65.41 |
| Os08t0546700-01 | Rice | plasma membrane | 63.55 | 65.33 |
| PGSC0003DMT400007890 | Potato | plasma membrane | 64.76 | 65.15 |
| Os09t0525900-01 | Rice | plasma membrane | 63.25 | 65.02 |
| VIT_02s0025g04130.t01 | Wine grape | cytosol, plasma membrane, vacuole | 64.16 | 64.94 |
| CDY45976 | Canola | plasma membrane | 62.05 | 64.58 |
| Bra026997.1-P | Field mustard | cytosol, golgi, plasma membrane | 62.05 | 64.58 |
| KRH09112 | Soybean | plasma membrane | 63.55 | 64.13 |
| AT1G63120.1 | Thale cress | cytosol, golgi, plasma membrane | 61.14 | 64.04 |
| CDY67235 | Canola | plasma membrane | 61.14 | 63.64 |
| VIT_16s0100g00640.t01 | Wine grape | plasma membrane | 62.05 | 63.38 |
| KRH38564 | Soybean | plasma membrane | 62.95 | 63.33 |
| KRG91456 | Soybean | cytosol, golgi, plasma membrane | 62.65 | 63.22 |
| KRH35359 | Soybean | cytosol, golgi, plasma membrane | 62.35 | 62.73 |
| CDY47350 | Canola | plasma membrane | 59.34 | 62.54 |
| Bra027622.1-P | Field mustard | plasma membrane | 58.73 | 62.1 |
| CDY49197 | Canola | plasma membrane | 59.34 | 61.37 |
| CDY66606 | Canola | plasma membrane | 55.12 | 60.2 |
| Bra019783.1-P | Field mustard | plasma membrane | 55.12 | 60.2 |
| AT5G07250.1 | Thale cress | plasma membrane | 62.65 | 60.12 |
| CDX98992 | Canola | plasma membrane | 61.45 | 60.0 |
| Bra009279.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 62.35 | 59.65 |
| CDX70021 | Canola | plasma membrane | 62.05 | 59.37 |
| AT1G12750.4 | Thale cress | plasma membrane | 54.52 | 58.96 |
| CDX70020 | Canola | mitochondrion, plasma membrane | 56.02 | 57.41 |
| Bra005930.1-P | Field mustard | plasma membrane | 56.02 | 57.23 |
| CDX78286 | Canola | plasma membrane | 55.72 | 56.92 |
| CDX81043 | Canola | plasma membrane | 55.12 | 56.13 |
| Os04t0569300-01 | Rice | cytosol | 56.93 | 55.26 |
| AT4G23070.1 | Thale cress | plasma membrane | 50.6 | 53.67 |
| CDY53134 | Canola | plasma membrane | 50.6 | 53.5 |
| CDY41251 | Canola | plasma membrane | 50.3 | 53.35 |
| Bra013673.1-P | Field mustard | plasma membrane | 45.18 | 53.19 |
| CDX98993 | Canola | cytosol | 50.6 | 52.83 |
| CDY60266 | Canola | plasma membrane | 55.72 | 51.68 |
| Os11t0704800-01 | Rice | plasma membrane | 56.02 | 49.73 |
| Bra009280.1-P | Field mustard | cytosol | 55.72 | 49.6 |
| Os01t0147300-01 | Rice | plasma membrane | 26.81 | 43.63 |
| HORVU3Hr1G029090.1 | Barley | plastid | 19.58 | 42.76 |
| HORVU0Hr1G006330.1 | Barley | plastid | 19.58 | 42.76 |
Protein Annotations
| Gene3D:1.20.1540.10 | MapMan:19.4.2.6 | EntrezGene:4349148 | UniProt:A0A0N7KS35 | ProteinID:BAT11714.1 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004252 | GO:GO:0005575 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008233 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019538 | InterPro:IPR035952 |
| EnsemblPlantsGene:Os10g0521900 | EnsemblPlants:Os10t0521900-01 | PFAM:PF01694 | PANTHER:PTHR22936 | PANTHER:PTHR22936:SF63 | InterPro:Peptidase_S54_rhomboid |
| InterPro:Peptidase_S54_rhomboid_dom | InterPro:Rhomboid-like_sf | SUPFAM:SSF144091 | TMHMM:TMhelix | UniParc:UPI0000F15A55 | RefSeq:XP_015614650.1 |
| SEG:seg | : | : | : | : | : |
Description
Rhomboid 17, RHOMBOID 17Similar to Membrane protein. (Os10t0521900-01)
Coordinates
chr10:+:20207343..20209484
Molecular Weight (calculated)
36432.9 Da
IEP (calculated)
9.359
GRAVY (calculated)
0.485
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAAARYDV EKGGRKREGE EERCGSPAAV AQYPQREGER EWVPWLVPAI LVANVVVFAV AMYVNNCPSH ASRGGACVAG FLRRFSFQPL SENPLLGPSS
101: ATLQKMGALV WDKVVHEHQG WRLVTCIWLH AGVVHLLANM LSLVLIGLRL EQQFGYMRIG IIYLVSGIGG SVLSSLFIRN SISVGASGAL FGLLGAMLSE
201: LFTNWTIYTN KAAALVTLLI VIAINLAIGI LPHVDNFAHI GGFLTGFLLG FIFLMRPHYG WMQRYVLPSS VKYTSKKYLA YQWILLAVAS VLAVIGFAVG
301: LSMLFRGVNA NERCHWCHYL SCIPTSRWTC GN
101: ATLQKMGALV WDKVVHEHQG WRLVTCIWLH AGVVHLLANM LSLVLIGLRL EQQFGYMRIG IIYLVSGIGG SVLSSLFIRN SISVGASGAL FGLLGAMLSE
201: LFTNWTIYTN KAAALVTLLI VIAINLAIGI LPHVDNFAHI GGFLTGFLLG FIFLMRPHYG WMQRYVLPSS VKYTSKKYLA YQWILLAVAS VLAVIGFAVG
301: LSMLFRGVNA NERCHWCHYL SCIPTSRWTC GN
001: MANRDVERVG KKNRGANNNY FYEESSGETH WTSWLIPAIV VANLAVFIAV MFVNDCPKKI TGPNKECVAR FLGRFSFQPL KENPLFGPSS STLEKMGALE
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC
Arabidopsis Description
RBL2RHOMBOID-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN1]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.