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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, golgi, cytosol

Predictor Summary:
  • nucleus 1
  • golgi 1
  • mitochondrion 1
  • cytosol 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, golgi, plasma membrane
Any Predictor:cytosol, golgi, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:golgi
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra002403.1-P
Bra006619.1-P
Bra020182.1-P
Bra030034.1-P
Bra032817.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G63120.1 Bra030034.1-P AT1G27300.1 21798944
AT1G63120.1 Bra032817.1-P AT1G27300.1 21798944
AT1G63120.1 Bra002403.1-P AT5G22290.1 21798944
AT1G63120.1 Bra006619.1-P AT5G22290.1 21798944
AT1G63120.1 Bra020182.1-P AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY45976 Canola plasma membrane 99.37 99.37
CDY67235 Canola plasma membrane 98.43 98.43
AT1G63120.1 Thale cress cytosol, golgi, plasma membrane 90.6 91.17
Bra027622.1-P Field mustard plasma membrane 89.66 91.08
VIT_02s0025g04130.t01 Wine grape cytosol, plasma membrane, vacuole 69.59 67.68
Bra019783.1-P Field mustard plasma membrane 62.7 65.79
PGSC0003DMT400007890 Potato plasma membrane 66.46 64.24
Os09t0525900-01 Rice plasma membrane 64.58 63.78
Solyc08g080500.2.1 Tomato cytosol, golgi, plasma membrane 66.14 63.36
TraesCS5D01G320400.1 Wheat plasma membrane 63.32 63.12
Zm00001d021231_P002 Maize plasma membrane 63.95 62.96
HORVU5Hr1G080690.2 Barley plasma membrane 63.32 62.93
TraesCS5A01G314000.1 Wheat plasma membrane 63.32 62.73
TraesCS5B01G314900.1 Wheat plasma membrane 63.32 62.54
Zm00001d052734_P002 Maize plasma membrane 63.01 62.42
EER99221 Sorghum cytosol, peroxisome, plasma membrane 63.32 62.15
Os10t0521900-01 Rice plasma membrane 64.58 62.05
Zm00001d006179_P002 Maize plasma membrane 63.32 61.77
Os08t0546700-01 Rice plasma membrane 62.38 61.61
Os03t0116400-01 Rice cytosol, peroxisome, plasma membrane 61.44 60.31
TraesCS1A01G188900.1 Wheat plasma membrane 61.76 60.24
TraesCS1D01G187500.1 Wheat plasma membrane 60.81 60.06
TraesCS4A01G179600.1 Wheat plasma membrane 36.05 59.9
Zm00001d029668_P001 Maize plasma membrane 62.7 59.88
Zm00001d029667_P001 Maize plasma membrane 62.7 59.88
Bra013673.1-P Field mustard plasma membrane 52.66 59.57
TraesCS1B01G196600.1 Wheat plasma membrane 60.19 58.9
EER94630 Sorghum cytosol, golgi, plasma membrane 61.76 58.81
HORVU7Hr1G056630.1 Barley plasma membrane 59.87 58.59
TraesCS7A01G269900.1 Wheat plasma membrane 59.25 58.51
HORVU1Hr1G048610.3 Barley plasma membrane 59.25 58.15
TraesCS7D01G270400.1 Wheat plasma membrane 59.56 57.93
TraesCS7B01G168100.1 Wheat plasma membrane 59.56 57.93
TraesCS4B01G356600.1 Wheat plasma membrane 60.5 57.78
Bra009279.1-P Field mustard cytosol, peroxisome, plasma membrane 62.7 57.64
TraesCS5A01G526000.1 Wheat plasma membrane 59.87 57.53
TraesCS4D01G350300.1 Wheat plasma membrane 59.56 57.06
Zm00001d027355_P001 Maize plasma membrane 57.05 56.52
EES11282 Sorghum cytosol 60.19 56.47
EER95642 Sorghum cytosol, golgi, plasma membrane 57.68 56.44
Zm00001d002632_P001 Maize plasma membrane 59.25 55.59
Bra005930.1-P Field mustard plasma membrane 56.11 55.08
TraesCS2A01G401000.1 Wheat plasma membrane 58.62 54.84
TraesCS2B01G419100.1 Wheat plasma membrane 57.99 54.73
TraesCS2D01G398500.1 Wheat plasma membrane 57.99 54.57
Os04t0569300-01 Rice cytosol 57.37 53.51
Bra028389.1-P Field mustard plasma membrane 61.44 49.12
HORVU4Hr1G086150.3 Barley plastid 59.25 48.71
Bra009280.1-P Field mustard cytosol 55.49 47.45
Bra030374.1-P Field mustard plasma membrane 45.45 46.47
Bra018974.1-P Field mustard plasma membrane 45.45 46.03
HORVU2Hr1G095170.6 Barley mitochondrion 48.59 42.01
Bra014862.1-P Field mustard cytosol 53.92 40.57
HORVU3Hr1G029090.1 Barley plastid 18.5 38.82
HORVU0Hr1G006330.1 Barley plastid 18.5 38.82
Bra015649.1-P Field mustard plasma membrane 39.5 32.64
Protein Annotations
Gene3D:1.20.1540.10MapMan:19.4.2.6EnsemblPlantsGene:Bra026997EnsemblPlants:Bra026997.1EnsemblPlants:Bra026997.1-PGO:GO:0003674
GO:GO:0003824GO:GO:0004252GO:GO:0005575GO:GO:0006508GO:GO:0008150GO:GO:0008152
GO:GO:0008233GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0019538InterPro:IPR035952
UniProt:M4EDY7PFAM:PF01694PANTHER:PTHR22936PANTHER:PTHR22936:SF63InterPro:Peptidase_S54_rhomboidInterPro:Peptidase_S54_rhomboid_dom
InterPro:Rhomboid-like_sfSUPFAM:SSF144091TMHMM:TMhelixUniParc:UPI0002542497SEG:seg:
Description
AT1G63120 (E=3e-141) ATRBL2 | ATRBL2 (Arabidopsis thaliana Rhomboid-like 2); serine-type endopeptidase
Coordinates
chrA09:+:7419786..7421251
Molecular Weight (calculated)
35522.9 Da
IEP (calculated)
9.935
GRAVY (calculated)
0.363
Length
319 amino acids
Sequence
(BLAST)
001: MANRDVERGG KQNRGVHNNN NYFYDESSRD THWTPWLVPA IVVANLAVFI AVMFVNDCPK KITGPNKACV ARFLGRFSFQ PLRENPLFGP SSSTLERMGA
101: LEWRKVVHEH QGWRLVTCMW LHAGIIHLLT NMLSLIFIGI RLEQQFGFIR VGLIYLVSGF GGSILSSLFL QESISVGASG ALFGLLGAML SELLTNWTIY
201: ANKAAALVTL LFIIAINLGL GLLPRVDNFA HIGGFLTGLC LGFILLVRPQ YGWEASRTNT SVTKRKHSMY QYVLFVVAAV LLVVGLTVGL VMLFKGENGN
301: KHCKWCHRLS CFPTSKWTC
Best Arabidopsis Sequence Match ( AT1G63120.1 )
(BLAST)
001: MANRDVERVG KKNRGANNNY FYEESSGETH WTSWLIPAIV VANLAVFIAV MFVNDCPKKI TGPNKECVAR FLGRFSFQPL KENPLFGPSS STLEKMGALE
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC
Arabidopsis Description
RBL2RHOMBOID-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN1]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.