Factsheet for Bra030374.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
golgi 2
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60552	Canola	plasma membrane	99.68	99.68
CDX87921	Canola	plasma membrane	65.06	96.67
Bra018974.1-P	Field mustard	plasma membrane	92.95	92.06
AT1G52580.1	Thale cress	cytosol, golgi, plasma membrane	90.06	90.94
VIT_09s0002g06570.t01	Wine grape	plasma membrane	57.05	61.59
KRH09741	Soybean	plasma membrane	61.22	60.44
Bra027622.1-P	Field mustard	plasma membrane	47.76	47.45
Bra013673.1-P	Field mustard	plasma membrane	42.63	47.16
Bra005930.1-P	Field mustard	plasma membrane	48.72	46.77
Bra026997.1-P	Field mustard	cytosol, golgi, plasma membrane	46.47	45.45
Bra009279.1-P	Field mustard	cytosol, peroxisome, plasma membrane	49.68	44.67
Bra019783.1-P	Field mustard	plasma membrane	42.63	43.75
Bra028389.1-P	Field mustard	plasma membrane	53.21	41.6
GSMUA_Achr2P08240_001	Banana	plasma membrane	48.72	41.53
Bra009280.1-P	Field mustard	cytosol	43.91	36.73
Bra014862.1-P	Field mustard	cytosol	46.47	34.2
Bra015649.1-P	Field mustard	plasma membrane	36.86	29.79

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	EnsemblPlantsGene:Bra030374	EnsemblPlants:Bra030374.1	EnsemblPlants:Bra030374.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	InterPro:IPR035952
UniProt:M4ENK4	PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF64	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom
InterPro:Rhomboid-like_sf	SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI0002547804	SEG:seg	:

Description

AT1G52580 (E=7e-118) ATRBL5 | ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)

Coordinates

chrA05:-:10692177..10693592

Molecular Weight (calculated)

34657.1 Da

IEP (calculated)

9.040

GRAVY (calculated)

0.304

Length

312 amino acids

Sequence
(BLAST)

001: MGKRPPNPSD IENGLPPLPP PARPPFRPPI PVPWYAWLVP LIFAANFVTF TITMYVNDCP ARSDECLLFD VLGRLSFQPI KENMLLGPSI PTLKRLGALE
101: RRLVEEGERW RLISCIWLHG GLLHLLANMI SLLCIGMRLE QEFGFLRIGA LYVLSGLGGS LMSCLTDSRG ERVSVGASGA LFGLLGAMLS ELITNWTIYE
201: NKCTALMTLI LIIALNLSVG FLPRVDNSAH CGGFLAGFLL GFVLLLRPQY GYVSPKYIPP GYDMKHKKSK YKCYQHVFRF TSLAILLAGF IAGYAKLLRE
301: HTVGSEPFRD VN

Best Arabidopsis Sequence Match ( AT1G52580.1 )
(BLAST)

001: MGKRPPIPPD IENGPPPPAR PHFRPPIPVP WVAWLVPLIL AANFVTFATT MYVNDCPARS DECLLFDVLG RLSFQPIKEN MLLGPSIPTL RKLGALERRL
101: VEEGERWRLI SCIWLHGGFL HLMANMISLM CIGMRLEQEF GFMRIGALYV ISGLGGSLVS CLTDSQGERV SVGASGALFG LLGAMLSELI TNWTIYENKC
201: TALMTLILII VLNLSVGFLP RVDNSAHFGG FLAGFFLGFV LLLRPQYGYV NPKYIPPGYD MKHKKSKHKC YQHIFRFTSL AILLAGFIAG YTKLLREHTI
301: QSMPFRDFN

Arabidopsis Description

RBL5RHOMBOID-like protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSR0]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.