Factsheet for Bra027622.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra020182.1-P
Bra030034.1-P
Bra032817.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63120.1	Bra030034.1-P	AT1G27300.1	21798944
AT1G63120.1	Bra032817.1-P	AT1G27300.1	21798944
AT1G63120.1	Bra002403.1-P	AT5G22290.1	21798944
AT1G63120.1	Bra006619.1-P	AT5G22290.1	21798944
AT1G63120.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49197	Canola	plasma membrane	99.36	97.2
Bra026997.1-P	Field mustard	cytosol, golgi, plasma membrane	91.08	89.66
AT1G63120.1	Thale cress	cytosol, golgi, plasma membrane	88.85	88.01
VIT_02s0025g04130.t01	Wine grape	cytosol, plasma membrane, vacuole	69.43	66.46
Bra019783.1-P	Field mustard	plasma membrane	63.69	65.79
PGSC0003DMT400007890	Potato	plasma membrane	67.2	63.94
Solyc08g080500.2.1	Tomato	cytosol, golgi, plasma membrane	66.88	63.06
Os09t0525900-01	Rice	plasma membrane	64.01	62.23
Zm00001d052734_P002	Maize	plasma membrane	63.38	61.8
TraesCS5D01G320400.1	Wheat	plasma membrane	62.74	61.56
TraesCS5A01G314000.1	Wheat	plasma membrane	62.74	61.18
Zm00001d021231_P002	Maize	plasma membrane	63.06	61.11
HORVU5Hr1G080690.2	Barley	plasma membrane	62.42	61.06
TraesCS5B01G314900.1	Wheat	plasma membrane	62.74	60.99
Os08t0546700-01	Rice	plasma membrane	62.42	60.68
EER99221	Sorghum	cytosol, peroxisome, plasma membrane	62.42	60.31
Bra013673.1-P	Field mustard	plasma membrane	54.14	60.28
Zm00001d006179_P002	Maize	plasma membrane	62.42	59.94
Os03t0116400-01	Rice	cytosol, peroxisome, plasma membrane	61.78	59.69
TraesCS4A01G179600.1	Wheat	plasma membrane	36.31	59.38
Os10t0521900-01	Rice	plasma membrane	62.1	58.73
TraesCS7A01G269900.1	Wheat	plasma membrane	60.19	58.51
HORVU7Hr1G056630.1	Barley	plasma membrane	60.19	57.98
TraesCS1D01G187500.1	Wheat	plasma membrane	59.55	57.89
TraesCS1A01G188900.1	Wheat	plasma membrane	60.19	57.8
Zm00001d029668_P001	Maize	plasma membrane	61.15	57.48
Zm00001d029667_P001	Maize	plasma membrane	61.15	57.48
TraesCS7B01G168100.1	Wheat	plasma membrane	59.87	57.32
TraesCS7D01G270400.1	Wheat	plasma membrane	59.87	57.32
Bra009279.1-P	Field mustard	cytosol, peroxisome, plasma membrane	62.74	56.77
TraesCS1B01G196600.1	Wheat	plasma membrane	58.92	56.75
TraesCS5A01G526000.1	Wheat	plasma membrane	59.87	56.63
EER94630	Sorghum	cytosol, golgi, plasma membrane	60.19	56.42
TraesCS4D01G350300.1	Wheat	plasma membrane	59.55	56.16
EER95642	Sorghum	cytosol, golgi, plasma membrane	58.28	56.13
HORVU1Hr1G048610.3	Barley	plasma membrane	57.96	56.0
TraesCS4B01G356600.1	Wheat	plasma membrane	59.55	55.99
Zm00001d027355_P001	Maize	plasma membrane	57.01	55.59
EES11282	Sorghum	cytosol	60.19	55.59
Bra005930.1-P	Field mustard	plasma membrane	56.69	54.77
Zm00001d002632_P001	Maize	plasma membrane	58.92	54.41
TraesCS2B01G419100.1	Wheat	plasma membrane	57.64	53.55
TraesCS2D01G398500.1	Wheat	plasma membrane	57.64	53.39
TraesCS2A01G401000.1	Wheat	plasma membrane	57.96	53.37
Os04t0569300-01	Rice	cytosol	56.69	52.05
HORVU4Hr1G086150.3	Barley	plastid	59.24	47.94
Bra028389.1-P	Field mustard	plasma membrane	60.83	47.87
Bra030374.1-P	Field mustard	plasma membrane	47.45	47.76
Bra018974.1-P	Field mustard	plasma membrane	46.82	46.67
Bra009280.1-P	Field mustard	cytosol	55.41	46.65
Bra014862.1-P	Field mustard	cytosol	55.41	41.04
HORVU2Hr1G095170.6	Barley	mitochondrion	48.09	40.92
HORVU3Hr1G029090.1	Barley	plastid	17.52	36.18
HORVU0Hr1G006330.1	Barley	plastid	17.52	36.18
Bra015649.1-P	Field mustard	plasma membrane	41.08	33.42

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	EnsemblPlantsGene:Bra027622	EnsemblPlants:Bra027622.1	EnsemblPlants:Bra027622.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	InterPro:IPR035952
UniProt:M4EFQ9	PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF63	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom
InterPro:Rhomboid-like_sf	SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI000254248C	SEG:seg	:

Description

AT1G63120 (E=2e-124) ATRBL2 | ATRBL2 (Arabidopsis thaliana Rhomboid-like 2); serine-type endopeptidase

Coordinates

chrA09:+:7313939..7315212

Molecular Weight (calculated)

34905.1 Da

IEP (calculated)

9.152

GRAVY (calculated)

0.425

Length

314 amino acids

Sequence
(BLAST)

001: MANRDSERGE GKQNNNNIYD ESSSDTHWTS WLVPLIVVAN LAVFIAVMFV NDCPKKIIGP NKACVARFLG RFSFQPLREN PLFGPSSSTL ERMGALEWGK
101: VVHEHQGWRL VTCMWLHAGI LHLLTNMLSL IFIGIRLEQQ FGFIRVGLIY LISGLGGSIL SSLFLQESIS VGASGALFGL LGAMLSELLT NWTIYANKAA
201: ALFTLLFIIA INLGLGLLPR VDNFAHIGGF ITGFCLGFIL LVRPQHGWES SRTNTSLTKR KYSIYQYVLF IVAVLILVVC LTVGSVMLFK GENGNKHCKW
301: CHRLSCFPTS KWTC

Best Arabidopsis Sequence Match ( AT1G63120.1 )
(BLAST)

001: MANRDVERVG KKNRGANNNY FYEESSGETH WTSWLIPAIV VANLAVFIAV MFVNDCPKKI TGPNKECVAR FLGRFSFQPL KENPLFGPSS STLEKMGALE
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC

Arabidopsis Description

RBL2RHOMBOID-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN1]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.