Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027622.1-P | Field mustard | plasma membrane | 97.2 | 99.36 |
| CDY47350 | Canola | plasma membrane | 96.57 | 98.41 |
| CDY45976 | Canola | plasma membrane | 89.41 | 89.97 |
| CDY67235 | Canola | plasma membrane | 88.78 | 89.34 |
| AT1G63120.1 | Thale cress | cytosol, golgi, plasma membrane | 86.92 | 88.01 |
| VIT_02s0025g04130.t01 | Wine grape | cytosol, plasma membrane, vacuole | 68.85 | 67.38 |
| CDY66606 | Canola | plasma membrane | 62.31 | 65.79 |
| PGSC0003DMT400007890 | Potato | plasma membrane | 66.36 | 64.55 |
| Solyc08g080500.2.1 | Tomato | cytosol, golgi, plasma membrane | 66.36 | 63.96 |
| Zm00001d052734_P002 | Maize | plasma membrane | 62.62 | 62.42 |
| Os09t0525900-01 | Rice | plasma membrane | 62.62 | 62.23 |
| TraesCS5D01G320400.1 | Wheat | plasma membrane | 61.37 | 61.56 |
| Zm00001d021231_P002 | Maize | plasma membrane | 61.99 | 61.42 |
| HORVU5Hr1G080690.2 | Barley | plasma membrane | 61.37 | 61.37 |
| TraesCS5A01G314000.1 | Wheat | plasma membrane | 61.37 | 61.18 |
| TraesCS5B01G314900.1 | Wheat | plasma membrane | 61.37 | 60.99 |
| Os08t0546700-01 | Rice | plasma membrane | 61.06 | 60.68 |
| EER99221 | Sorghum | cytosol, peroxisome, plasma membrane | 61.37 | 60.62 |
| Zm00001d006179_P002 | Maize | plasma membrane | 61.37 | 60.24 |
| Os03t0116400-01 | Rice | cytosol, peroxisome, plasma membrane | 60.75 | 60.0 |
| CDY41251 | Canola | plasma membrane | 58.26 | 59.74 |
| CDY53134 | Canola | plasma membrane | 58.26 | 59.55 |
| TraesCS4A01G179600.1 | Wheat | plasma membrane | 35.51 | 59.38 |
| Os10t0521900-01 | Rice | plasma membrane | 61.37 | 59.34 |
| CDX98992 | Canola | plasma membrane | 62.31 | 58.82 |
| TraesCS7A01G269900.1 | Wheat | plasma membrane | 58.88 | 58.51 |
| HORVU7Hr1G056630.1 | Barley | plasma membrane | 59.19 | 58.28 |
| Zm00001d029667_P001 | Maize | plasma membrane | 60.44 | 58.08 |
| Zm00001d029668_P001 | Maize | plasma membrane | 60.44 | 58.08 |
| CDX70021 | Canola | plasma membrane | 62.62 | 57.93 |
| TraesCS1D01G187500.1 | Wheat | plasma membrane | 58.26 | 57.89 |
| TraesCS1A01G188900.1 | Wheat | plasma membrane | 58.88 | 57.8 |
| TraesCS7B01G168100.1 | Wheat | plasma membrane | 58.88 | 57.62 |
| TraesCS7D01G270400.1 | Wheat | plasma membrane | 58.88 | 57.62 |
| TraesCS5A01G526000.1 | Wheat | plasma membrane | 59.19 | 57.23 |
| EER94630 | Sorghum | cytosol, golgi, plasma membrane | 59.5 | 57.01 |
| CDY60266 | Canola | plasma membrane | 63.55 | 56.98 |
| TraesCS4D01G350300.1 | Wheat | plasma membrane | 58.88 | 56.76 |
| EER95642 | Sorghum | cytosol, golgi, plasma membrane | 57.63 | 56.75 |
| TraesCS1B01G196600.1 | Wheat | plasma membrane | 57.63 | 56.75 |
| TraesCS4B01G356600.1 | Wheat | plasma membrane | 58.88 | 56.59 |
| Zm00001d027355_P001 | Maize | plasma membrane | 56.39 | 56.21 |
| HORVU1Hr1G048610.3 | Barley | plasma membrane | 56.7 | 56.0 |
| CDX70020 | Canola | mitochondrion, plasma membrane | 56.39 | 55.86 |
| EES11282 | Sorghum | cytosol | 58.88 | 55.59 |
| CDX78286 | Canola | plasma membrane | 55.76 | 55.08 |
| CDX81043 | Canola | plasma membrane | 55.76 | 54.91 |
| Zm00001d002632_P001 | Maize | plasma membrane | 57.63 | 54.41 |
| TraesCS2B01G419100.1 | Wheat | plasma membrane | 57.01 | 54.14 |
| TraesCS2D01G398500.1 | Wheat | plasma membrane | 57.01 | 53.98 |
| TraesCS2A01G401000.1 | Wheat | plasma membrane | 57.32 | 53.96 |
| Os04t0569300-01 | Rice | cytosol | 56.07 | 52.63 |
| CDX98993 | Canola | cytosol | 50.47 | 50.94 |
| CDX87921 | Canola | plasma membrane | 33.02 | 50.48 |
| CDY39528 | Canola | plasma membrane | 60.12 | 50.39 |
| CDY47879 | Canola | plasma membrane | 59.5 | 50.13 |
| HORVU4Hr1G086150.3 | Barley | plastid | 58.57 | 48.45 |
| CDY60552 | Canola | plasma membrane | 46.42 | 47.76 |
| CDY40148 | Canola | plasma membrane | 46.11 | 46.98 |
| CDY65908 | Canola | plasma membrane | 45.79 | 46.67 |
| CDX78204 | Canola | plasma membrane | 56.07 | 46.04 |
| CDY65838 | Canola | plasma membrane | 56.07 | 46.04 |
| CDX76189 | Canola | cytosol, peroxisome, plasma membrane | 55.14 | 45.27 |
| CDY30844 | Canola | cytosol, peroxisome, plasma membrane | 55.14 | 45.27 |
| CDX73525 | Canola | plasma membrane | 55.45 | 44.28 |
| HORVU2Hr1G095170.6 | Barley | mitochondrion | 47.66 | 41.46 |
| HORVU0Hr1G006330.1 | Barley | plastid | 17.13 | 36.18 |
| HORVU3Hr1G029090.1 | Barley | plastid | 17.13 | 36.18 |
| CDX87497 | Canola | plasma membrane | 40.19 | 33.42 |
| CDX88394 | Canola | plasma membrane | 38.01 | 31.44 |
Protein Annotations
| Gene3D:1.20.1540.10 | MapMan:19.4.2.6 | GO:A0A078IGU7 | UniProt:A0A078IGU7 | EnsemblPlants:CDY49197 | ProteinID:CDY49197 |
| ProteinID:CDY49197.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004252 | GO:GO:0005575 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 |
| GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00092561001 | InterPro:IPR035952 | PFAM:PF01694 | PANTHER:PTHR22936 | PANTHER:PTHR22936:SF63 |
| InterPro:Peptidase_S54_rhomboid | InterPro:Peptidase_S54_rhomboid_dom | InterPro:Rhomboid-like_sf | SUPFAM:SSF144091 | TMHMM:TMhelix | UniParc:UPI0004EE4052 |
| SEG:seg | : | : | : | : | : |
Description
BnaA09g10810DRhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078IGU7]
Coordinates
chrLK032817:+:32281..33925
Molecular Weight (calculated)
35610.8 Da
IEP (calculated)
9.314
GRAVY (calculated)
0.374
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MANRDSERGG GGKQNNTNNN NNNYIYDESS SDTHWTSWLV PLIVVANLAV FIAVMFVNDC PKKIIGPNKA CVARFLGRFS FQPLRENPLF GPSSSTLERM
101: GALEWGKVVH EHQGWRLVTC MWLHAGILHL LTNMLSLIFI GIRLEQQFGF IRVGLIYLIS GLGGSILSSL FLQESISVGA SGALFGLLGA MLSELLTNWT
201: IYANKAAALF TLLFIIAINL GLGLLPRVDN FAHIGGFITG FCLGFILLVR PQHGWESSRT NTSLTKRKYS IYQYVLFIVA VLILVVCLTV GSVMLFKGEN
301: GNKHCKWCHR LSCFPTSKWT C
101: GALEWGKVVH EHQGWRLVTC MWLHAGILHL LTNMLSLIFI GIRLEQQFGF IRVGLIYLIS GLGGSILSSL FLQESISVGA SGALFGLLGA MLSELLTNWT
201: IYANKAAALF TLLFIIAINL GLGLLPRVDN FAHIGGFITG FCLGFILLVR PQHGWESSRT NTSLTKRKYS IYQYVLFIVA VLILVVCLTV GSVMLFKGEN
301: GNKHCKWCHR LSCFPTSKWT C
001: MANRDVERVG KKNRGANNNY FYEESSGETH WTSWLIPAIV VANLAVFIAV MFVNDCPKKI TGPNKECVAR FLGRFSFQPL KENPLFGPSS STLEKMGALE
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC
Arabidopsis Description
RBL2RHOMBOID-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN1]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.