CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
golgi 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	golgi, plasma membrane, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030374.1-P	Field mustard	plasma membrane	99.68	99.68
CDX87921	Canola	plasma membrane	65.38	97.14
CDY65908	Canola	plasma membrane	93.27	92.38
CDY40148	Canola	plasma membrane	92.63	91.75
AT1G52580.1	Thale cress	cytosol, golgi, plasma membrane	90.38	91.26
VIT_09s0002g06570.t01	Wine grape	plasma membrane	57.05	61.59
KRH09741	Soybean	plasma membrane	61.54	60.76
CDX78286	Canola	plasma membrane	49.36	47.38
CDY47350	Canola	plasma membrane	47.76	47.3
CDX81043	Canola	plasma membrane	49.04	46.93
CDY49197	Canola	plasma membrane	47.76	46.42
CDY45976	Canola	plasma membrane	46.47	45.45
CDY67235	Canola	plasma membrane	46.47	45.45
CDX98992	Canola	plasma membrane	49.04	45.0
CDX70021	Canola	plasma membrane	49.68	44.67
CDY41251	Canola	plasma membrane	43.91	43.77
CDY66606	Canola	plasma membrane	42.63	43.75
CDY53134	Canola	plasma membrane	43.59	43.31
CDY47879	Canola	plasma membrane	52.88	43.31
CDX70020	Canola	mitochondrion, plasma membrane	44.23	42.59
CDY39528	Canola	plasma membrane	52.24	42.56
GSMUA_Achr2P08240_001	Banana	plasma membrane	48.72	41.53
CDX78204	Canola	plasma membrane	48.4	38.62
CDY65838	Canola	plasma membrane	48.4	38.62
CDY60266	Canola	plasma membrane	44.23	38.55
CDY30844	Canola	cytosol, peroxisome, plasma membrane	47.76	38.11
CDX76189	Canola	cytosol, peroxisome, plasma membrane	47.76	38.11
CDX98993	Canola	cytosol	37.82	37.11
CDX73525	Canola	plasma membrane	47.44	36.82
CDX87497	Canola	plasma membrane	36.86	29.79
CDX88394	Canola	plasma membrane	36.22	29.12

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	GO:A0A078J7E2	UniProt:A0A078J7E2	EnsemblPlants:CDY60552	ProteinID:CDY60552
ProteinID:CDY60552.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00029751001	InterPro:IPR035952	PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF64
InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom	InterPro:Rhomboid-like_sf	SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI0004EF36D5
SEG:seg	:	:	:	:	:

Description

BnaA05g35710DRhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078J7E2]

Coordinates

chrLK033892:+:7931..9590

Molecular Weight (calculated)

34685.1 Da

IEP (calculated)

9.043

GRAVY (calculated)

0.303

Length

312 amino acids

Sequence
(BLAST)

001: MGKRPPNPSD IENGLPPLPP PARPPFRPPI PVPWYAWLVP LIFAANFVTF TITMYVNDCP ARSDECLLFD VLGRLSFQPI KENMLLGPSI PTLRRLGALE
101: RRLVEEGERW RLISCIWLHG GLLHLLANMI SLLCIGMRLE QEFGFLRIGA LYVLSGLGGS LMSCLTDSRG ERVSVGASGA LFGLLGAMLS ELITNWTIYE
201: NKCTALMTLI LIIALNLSVG FLPRVDNSAH CGGFLAGFLL GFVLLLRPQY GYVSPKYIPP GYDMKHKKSK YKCYQHVFRF TSLAILLAGF IAGYAKLLRE
301: HTVGSEPFRD VN

Best Arabidopsis Sequence Match ( AT1G52580.1 )
(BLAST)

001: MGKRPPIPPD IENGPPPPAR PHFRPPIPVP WVAWLVPLIL AANFVTFATT MYVNDCPARS DECLLFDVLG RLSFQPIKEN MLLGPSIPTL RKLGALERRL
101: VEEGERWRLI SCIWLHGGFL HLMANMISLM CIGMRLEQEF GFMRIGALYV ISGLGGSLVS CLTDSQGERV SVGASGALFG LLGAMLSELI TNWTIYENKC
201: TALMTLILII VLNLSVGFLP RVDNSAHFGG FLAGFFLGFV LLLRPQYGYV NPKYIPPGYD MKHKKSKHKC YQHIFRFTSL AILLAGFIAG YTKLLREHTI
301: QSMPFRDFN

Arabidopsis Description

RBL5RHOMBOID-like protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSR0]
SUBAcon: [cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.