Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- golgi 1
- mitochondrion 1
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60552 | Canola | plasma membrane | 91.26 | 90.38 |
| Bra030374.1-P | Field mustard | plasma membrane | 90.94 | 90.06 |
| Bra018974.1-P | Field mustard | plasma membrane | 91.26 | 89.52 |
| CDY65908 | Canola | plasma membrane | 91.26 | 89.52 |
| CDY40148 | Canola | plasma membrane | 90.61 | 88.89 |
| CDX87921 | Canola | plasma membrane | 59.87 | 88.1 |
| VIT_09s0002g06570.t01 | Wine grape | plasma membrane | 57.61 | 61.59 |
| KRH09741 | Soybean | plasma membrane | 60.19 | 58.86 |
| AT1G63120.1 | Thale cress | cytosol, golgi, plasma membrane | 48.22 | 47.0 |
| AT1G12750.4 | Thale cress | plasma membrane | 43.37 | 43.65 |
| AT5G07250.1 | Thale cress | plasma membrane | 47.9 | 42.77 |
| AT2G29050.1 | Thale cress | golgi, peroxisome, plasma membrane, plastid | 53.07 | 42.16 |
| AT4G23070.1 | Thale cress | plasma membrane | 42.39 | 41.85 |
| GSMUA_Achr2P08240_001 | Banana | plasma membrane | 47.9 | 40.44 |
| AT3G53780.2 | Thale cress | plasma membrane | 46.6 | 36.55 |
| AT1G77860.2 | Thale cress | nucleus, peroxisome, plasma membrane | 34.63 | 27.79 |
Protein Annotations
| Gene3D:1.20.1540.10 | MapMan:19.4.2.6 | EntrezGene:841690 | ProteinID:AAD55606.1 | ProteinID:AEE32826.1 | ArrayExpress:AT1G52580 |
| EnsemblPlantsGene:AT1G52580 | RefSeq:AT1G52580 | TAIR:AT1G52580 | RefSeq:AT1G52580-TAIR-G | EnsemblPlants:AT1G52580.1 | TAIR:AT1G52580.1 |
| Symbol:ATRBL5 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004252 | GO:GO:0005575 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 |
| GO:GO:0019538 | InterPro:IPR035952 | RefSeq:NP_175667.1 | PFAM:PF01694 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001185 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PANTHER:PTHR22936 | PANTHER:PTHR22936:SF64 | InterPro:Peptidase_S54_rhomboid | InterPro:Peptidase_S54_rhomboid_dom | UniProt:Q9SSR0 | InterPro:Rhomboid-like_sf |
| MEROPS:S54.A01 | SUPFAM:SSF144091 | TMHMM:TMhelix | UniParc:UPI00000A4579 | SEG:seg | : |
Description
RBL5RHOMBOID-like protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSR0]
Coordinates
chr1:+:19587603..19589052
Molecular Weight (calculated)
34557.0 Da
IEP (calculated)
9.218
GRAVY (calculated)
0.297
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKRPPIPPD IENGPPPPAR PHFRPPIPVP WVAWLVPLIL AANFVTFATT MYVNDCPARS DECLLFDVLG RLSFQPIKEN MLLGPSIPTL RKLGALERRL
101: VEEGERWRLI SCIWLHGGFL HLMANMISLM CIGMRLEQEF GFMRIGALYV ISGLGGSLVS CLTDSQGERV SVGASGALFG LLGAMLSELI TNWTIYENKC
201: TALMTLILII VLNLSVGFLP RVDNSAHFGG FLAGFFLGFV LLLRPQYGYV NPKYIPPGYD MKHKKSKHKC YQHIFRFTSL AILLAGFIAG YTKLLREHTI
301: QSMPFRDFN
101: VEEGERWRLI SCIWLHGGFL HLMANMISLM CIGMRLEQEF GFMRIGALYV ISGLGGSLVS CLTDSQGERV SVGASGALFG LLGAMLSELI TNWTIYENKC
201: TALMTLILII VLNLSVGFLP RVDNSAHFGG FLAGFFLGFV LLLRPQYGYV NPKYIPPGYD MKHKKSKHKC YQHIFRFTSL AILLAGFIAG YTKLLREHTI
301: QSMPFRDFN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.