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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plastid 1
  • plasma membrane 4
  • extracellular 1
  • golgi 1
  • endoplasmic reticulum 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plasma membrane, plastid
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY39528 Canola plasma membrane 97.11 96.61
Bra028389.1-P Field mustard plasma membrane 99.21 94.74
AT2G29050.1 Thale cress golgi, peroxisome, plasma membrane, plastid 86.88 85.09
VIT_06s0004g04890.t01 Wine grape plasma membrane 70.34 68.54
KRH10251 Soybean plasma membrane 66.93 65.55
Os01t0147300-01 Rice plasma membrane 34.65 64.71
KRH23080 Soybean plasma membrane 66.14 64.29
GSMUA_Achr5P20070_001 Banana plasma membrane 34.38 63.9
TraesCS4A01G176100.1 Wheat plasma membrane 52.23 62.78
CDY45976 Canola plasma membrane 51.44 61.44
CDY67235 Canola plasma membrane 51.18 61.13
CDY47350 Canola plasma membrane 50.39 60.95
CDY49197 Canola plasma membrane 50.13 59.5
TraesCS3D01G070700.1 Wheat mitochondrion, plasma membrane 47.51 59.34
Os11t0704800-01 Rice plasma membrane 57.22 58.29
TraesCS3B01G085300.1 Wheat plasma membrane 56.96 58.02
CDY66606 Canola plasma membrane 46.19 57.89
TraesCS3A01G071500.1 Wheat plasma membrane 56.69 57.75
CDX78286 Canola plasma membrane 48.29 56.62
CDX98992 Canola plasma membrane 50.39 56.47
HORVU4Hr1G027850.1 Barley peroxisome 56.17 56.46
CDX81043 Canola plasma membrane 47.77 55.83
TraesCS4D01G136600.2 Wheat plasma membrane 55.64 55.79
CDX70021 Canola plasma membrane 50.39 55.33
TraesCS4B01G141600.1 Wheat plasma membrane 55.64 55.06
CDX70020 Canola mitochondrion, plasma membrane 46.72 54.94
GSMUA_Achr5P20060_001 Banana cytosol 7.87 54.55
CDY60552 Canola plasma membrane 43.31 52.88
EES00318 Sorghum golgi, peroxisome, plasma membrane 58.01 52.49
CDY40148 Canola plasma membrane 43.31 52.38
CDY41251 Canola plasma membrane 42.78 52.08
CDY65908 Canola plasma membrane 43.04 52.06
CDY53134 Canola plasma membrane 42.78 51.91
CDX87921 Canola plasma membrane 28.61 51.9
CDY65838 Canola plasma membrane 53.02 51.66
CDX78204 Canola plasma membrane 53.02 51.66
CDY60266 Canola plasma membrane 47.51 50.56
CDX98993 Canola cytosol 41.99 50.31
CDY30844 Canola cytosol, peroxisome, plasma membrane 51.18 49.87
CDX76189 Canola cytosol, peroxisome, plasma membrane 51.18 49.87
CDX73525 Canola plasma membrane 52.49 49.75
Zm00001d048606_P001 Maize cytosol, nucleus, plasma membrane 50.92 48.38
OQU84103 Sorghum golgi, peroxisome, plasma membrane, plastid 51.97 45.94
Zm00001d039870_P002 Maize plasma membrane 58.53 44.42
CDX87497 Canola plasma membrane 38.58 38.08
CDX88394 Canola plasma membrane 37.8 37.11
Protein Annotations
Gene3D:1.20.1540.10MapMan:19.4.2.6GO:A0A078IET5UniProt:A0A078IET5EnsemblPlants:CDY47879ProteinID:CDY47879
ProteinID:CDY47879.1GO:GO:0003674GO:GO:0003824GO:GO:0004252GO:GO:0005575GO:GO:0006508
GO:GO:0008150GO:GO:0008152GO:GO:0008233GO:GO:0016020GO:GO:0016021GO:GO:0016787
GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00088385001InterPro:IPR035952PFAM:PF01694PANTHER:PTHR22936PANTHER:PTHR22936:SF46
InterPro:Peptidase_S54_rhomboidInterPro:Peptidase_S54_rhomboid_domInterPro:Rhomboid-like_sfSUPFAM:SSF144091TMHMM:TMhelixUniParc:UPI0004EE77A2
SEG:seg:::::
Description
BnaA07g14240DRhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078IET5]
Coordinates
chrLK032743:-:36774..38669
Molecular Weight (calculated)
42306.1 Da
IEP (calculated)
9.522
GRAVY (calculated)
0.284
Length
381 amino acids
Sequence
(BLAST)
001: MSREGLEIKV VDPPPQPPVS NVSAARSSPG GRQRASFAEF RPFKLWFPWL VPAIVAANIV LFAVSMFIND CPKNSQKCSA RFLGRFAFQP MKENPLLGPS
101: SSTLEKMGAL EVTMVVDKHQ VWRLFTCIWL HAGVFHVLAN MLSLIFIGIR LEQEFGFVRI GLLYMISGFG GSLLSSLFNR EGISVGASGA LFGLLGAMLS
201: ELLTNWTIYA NKFAALLTLI FIIAINLAVG ILPHVDNFAH LGGFTSGFLL GFVFLIRPQY GYFNQRNNPR GYAAPSAKSK HKPYQYVLWI TSLLLLIAGY
301: TVGLIVLLRG TDLNKHCSWC HYLSCMPTSL WNCKSQNMYC KSSQIGKQMN LTCIANGRTE MYTLGNENQS QIQQMCSQLC S
Best Arabidopsis Sequence Match ( AT2G29050.1 )
(BLAST)
001: MARDRREGLE IKVVNPPAAA TNNVAVETSP ATATRRRRQQ QRASFAEFRP FKLWFPWLVP AIVVANIALF AISMFINNCP KNSAYCLARF LGRFAFQPMK
101: ENPLLGPSSL TLEKMGALDV SMVVHKHEVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS LLSSLFNRAG ISVGASGALF
201: GLLGAMLSEL LTNWTIYANK FAALLTLIFI IAINLAVGIL PHVDNFAHLG GFTSGFLLGF VFLIRPQYGY FNQRNNPRGY AAPSAKSKHK PYQYVLWITS
301: LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS CKSQNVYCES SQIGQQMNLT CITNGKTEMY KLSNDIPSRI QQLCSQLCR
Arabidopsis Description
RBL1RHOMBOID-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQX7]
SUBAcon: [golgi,plasma membrane,peroxisome,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.