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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 2
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, peroxisome, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX78204 Canola plasma membrane 94.78 97.44
CDY65838 Canola plasma membrane 94.53 97.19
CDY30844 Canola cytosol, peroxisome, plasma membrane 88.81 91.3
CDX76189 Canola cytosol, peroxisome, plasma membrane 88.31 90.79
AT3G53780.2 Thale cress plasma membrane 86.57 88.32
TraesCS4A01G176100.1 Wheat plasma membrane 46.27 58.68
PGSC0003DMT400022764 Potato plasma membrane 54.73 56.99
Solyc09g010880.2.1 Tomato extracellular 54.23 56.92
CDY47350 Canola plasma membrane 44.53 56.83
CDY67235 Canola plasma membrane 44.78 56.43
KRH66050 Soybean plasma membrane 53.98 56.36
KRG99546 Soybean plasma membrane 53.73 56.25
VIT_08s0007g00470.t01 Wine grape plasma membrane 53.98 55.93
Os01t0147300-01 Rice plasma membrane 28.36 55.88
CDY45976 Canola plasma membrane 44.28 55.8
CDY49197 Canola plasma membrane 44.28 55.45
CDX98992 Canola plasma membrane 45.27 53.53
TraesCS4D01G136600.2 Wheat plasma membrane 50.5 53.42
HORVU4Hr1G027850.1 Barley peroxisome 50.25 53.3
TraesCS4B01G141600.1 Wheat plasma membrane 50.75 52.99
CDX70021 Canola plasma membrane 45.52 52.74
CDY66606 Canola plasma membrane 39.8 52.63
KRG99955 Soybean endoplasmic reticulum, peroxisome, plasma membrane 51.74 52.53
CDY47879 Canola plasma membrane 49.75 52.49
CDY39528 Canola plasma membrane 49.75 52.22
CDX70020 Canola mitochondrion, plasma membrane 42.04 52.16
TraesCS3D01G070700.1 Wheat mitochondrion, plasma membrane 39.55 52.13
Os11t0704800-01 Rice plasma membrane 48.26 51.87
CDX81043 Canola plasma membrane 41.79 51.53
KRH49106 Soybean plasma membrane 34.08 51.12
CDX78286 Canola plasma membrane 41.04 50.77
CDY53134 Canola plasma membrane 39.55 50.64
CDY41251 Canola plasma membrane 39.3 50.48
TraesCS3B01G085300.1 Wheat plasma membrane 46.27 49.73
TraesCS3A01G071500.1 Wheat plasma membrane 46.02 49.47
CDX98993 Canola cytosol 38.56 48.74
Zm00001d048606_P001 Maize cytosol, nucleus, plasma membrane 48.01 48.13
CDX87921 Canola plasma membrane 25.12 48.1
CDY60552 Canola plasma membrane 36.82 47.44
EES00318 Sorghum golgi, peroxisome, plasma membrane 49.25 47.03
CDY40148 Canola plasma membrane 36.57 46.67
OQU84103 Sorghum golgi, peroxisome, plasma membrane, plastid 50.0 46.64
CDY65908 Canola plasma membrane 36.32 46.35
CDY60266 Canola plasma membrane 40.55 45.53
Zm00001d039870_P002 Maize plasma membrane 50.0 40.04
CDX87497 Canola plasma membrane 33.33 34.72
CDX88394 Canola plasma membrane 32.34 33.51
Protein Annotations
Gene3D:1.20.1540.10MapMan:19.4.2.6GO:A0A078C9S8EnsemblPlants:CDX73525ProteinID:CDX73525ProteinID:CDX73525.1
GO:GO:0003674GO:GO:0003824GO:GO:0004252GO:GO:0005575GO:GO:0006508GO:GO:0008150
GO:GO:0008152GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00109049001
InterPro:IPR035952PFAM:PF01694PANTHER:PTHR22936PANTHER:PTHR22936:SF46InterPro:Peptidase_S54_rhomboidInterPro:Peptidase_S54_rhomboid_dom
InterPro:Rhomboid-like_sfSUPFAM:SSF144091TMHMM:TMhelixUniParc:UPI0004EDD9B2SEG:seg:
Description
BnaC08g24780D
Coordinates
chrLK031799:+:976801..978720
Molecular Weight (calculated)
44483.3 Da
IEP (calculated)
9.179
GRAVY (calculated)
0.213
Length
402 amino acids
Sequence
(BLAST)
001: MGEKDSETAP IWGKTQQRES SNIHPVNIES STQSGQPRSL NRSRGGSYAE RGRGVKEFRS WFPWLIPCFV IANVAVFVIT MYVNNCPKKS GDCFAGFLGR
101: FSFQSTRENP LLGPSSLTTD FDFGQTGFFE IDFGGLEVKK VVKGDEGWRL LSCNWLHGGV VHLLVNMLTL LFIGMRMERE FGFIRIGLLY LISGFGGSIL
201: SALFLRSNIS VGASGAVFGL LGGMLSEIFI NWTIYSNKVV TILTLVLIVA VNLGLGVLPG VDNFAHIGGF ATGFLLGFVL LIRPHYGWIN QRNAPLGKPH
301: KYKMYQVILW TMSLLLLLGW FIVGLISLFN NVDGNKHCSW CHYLSCVPTS RWSCNREPAS CTTTQLGNQL SMTCLRNGKS GSYILANPSD SRINSLCVQL
401: CR
Best Arabidopsis Sequence Match ( AT3G53780.2 )
(BLAST)
001: MGEKDSETAP IWGKTRERER SNNNNIQPMD LESSSSVSGQ QRSLTQSRSS YEERGRGVKE FRSWFPWLIP CFVVANVAVF VITMYVNNCP KKSGDCFADF
101: LGRFSFQNTR ENPLLGPSSL TLQTMGGLDV KKVVKGDEGW RLLSCNWLHG GVVHLLMNML TLLFIGIRME REFGFIRIGL LYLISGFGGS ILSALFLRSN
201: ISVGASGAVF GLLGGMLSEI FINWTIYSNK VVTIVTLVLI VAVNLGLGVL PGVDNFAHIG GFATGFLLGF VLLIRPHYGW INQRNGPGAK PHRFKIYQGI
301: LWTISLLILV AGFIVGLISL FNNVDGNEHC SWCHYLSCVP TSKWSCNREP ASCTTTQLGN QLSMTCLRNG KSASYILANP SDSRINSLCV QLCR
Arabidopsis Description
RBL4RHOMBOID-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:F4JBM4]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.