Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 9
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G085300.1 | Wheat | plasma membrane | 77.45 | 42.25 |
| TraesCS3A01G071500.1 | Wheat | plasma membrane | 76.47 | 41.71 |
| EES00318 | Sorghum | golgi, peroxisome, plasma membrane | 84.31 | 40.86 |
| TraesCS3D01G070700.1 | Wheat | mitochondrion, plasma membrane | 55.88 | 37.38 |
| Zm00001d039870_P002 | Maize | plasma membrane | 85.29 | 34.66 |
| CDY47879 | Canola | plasma membrane | 64.71 | 34.65 |
| KRG99546 | Soybean | plasma membrane | 65.2 | 34.64 |
| KRH66050 | Soybean | plasma membrane | 65.2 | 34.55 |
| CDY39528 | Canola | plasma membrane | 64.71 | 34.46 |
| AT2G29050.1 | Thale cress | golgi, peroxisome, plasma membrane, plastid | 64.22 | 33.68 |
| KRH49106 | Soybean | plasma membrane | 44.12 | 33.58 |
| VIT_08s0007g00470.t01 | Wine grape | plasma membrane | 63.24 | 33.25 |
| Bra028389.1-P | Field mustard | plasma membrane | 64.22 | 32.83 |
| PGSC0003DMT400011238 | Potato | plasma membrane | 60.78 | 32.04 |
| VIT_06s0004g04890.t01 | Wine grape | plasma membrane | 61.27 | 31.97 |
| Solyc06g005580.2.1 | Tomato | plasma membrane | 60.29 | 31.78 |
| Os11t0704800-01 | Rice | plasma membrane | 57.35 | 31.28 |
| KRH10251 | Soybean | plasma membrane | 59.31 | 31.11 |
| KRH23080 | Soybean | plasma membrane | 58.33 | 30.36 |
| Os09t0525900-01 | Rice | plasma membrane | 47.55 | 30.03 |
| KRG99955 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane | 57.84 | 29.8 |
| AT3G53780.2 | Thale cress | plasma membrane | 57.35 | 29.7 |
| CDX78204 | Canola | plasma membrane | 55.39 | 28.9 |
| CDY65838 | Canola | plasma membrane | 55.39 | 28.9 |
| Os08t0546700-01 | Rice | plasma membrane | 45.59 | 28.79 |
| CDX73525 | Canola | plasma membrane | 55.88 | 28.36 |
| Os03t0116400-01 | Rice | cytosol, peroxisome, plasma membrane | 45.1 | 28.31 |
| CDX76189 | Canola | cytosol, peroxisome, plasma membrane | 53.92 | 28.13 |
| CDY30844 | Canola | cytosol, peroxisome, plasma membrane | 53.92 | 28.13 |
| Os10t0521900-01 | Rice | plasma membrane | 43.63 | 26.81 |
| Os04t0569300-01 | Rice | cytosol | 44.61 | 26.61 |
| Bra014862.1-P | Field mustard | cytosol | 52.94 | 25.47 |
Protein Annotations
| Gene3D:1.20.1540.10 | MapMan:19.4.2.6 | EMBL:AK242128 | UniProt:B7F9A1 | ProteinID:BAS70383.1 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004252 | GO:GO:0005575 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008233 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019538 | InterPro:IPR035952 |
| EnsemblPlantsGene:Os01g0147300 | EnsemblPlants:Os01t0147300-01 | PFAM:PF01694 | PANTHER:PTHR22936 | PANTHER:PTHR22936:SF46 | InterPro:Peptidase_S54_rhomboid |
| InterPro:Peptidase_S54_rhomboid_dom | InterPro:Rhomboid-like_sf | SUPFAM:SSF144091 | TMHMM:TMhelix | UniParc:UPI000188B030 | SEG:seg |
Description
Rhomboid 1, RHOMBOID 1Similar to membrane protein. (Os01t0147300-01)
Coordinates
chr1:+:2568051..2570029
Molecular Weight (calculated)
22305.3 Da
IEP (calculated)
8.210
GRAVY (calculated)
0.454
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSNISVGAS GALFGLLGSM LSELITNWTI YENKFAALLT LVIIILINLA VGILPHVDNF AHLGGFTSGF FLGFVLLVRP QFGYINQKNS PLGLPMGTTK
101: SKYKTYQIIL WVIATLILIS GFTIGFILVL KGFNASEHCS WCHYLSCVPT SKWSCNTPNN YCMSSQLGNQ LNLTCESNGK TEAYTLNNPN STEAIKHLCV
201: HLCS
101: SKYKTYQIIL WVIATLILIS GFTIGFILVL KGFNASEHCS WCHYLSCVPT SKWSCNTPNN YCMSSQLGNQ LNLTCESNGK TEAYTLNNPN STEAIKHLCV
201: HLCS
001: MANRDVERVG KKNRGANNNY FYEESSGETH WTSWLIPAIV VANLAVFIAV MFVNDCPKKI TGPNKECVAR FLGRFSFQPL KENPLFGPSS STLEKMGALE
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC
Arabidopsis Description
RBL2RHOMBOID-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN1]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.