Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 3
- nucleus 1
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_09s0002g03770.t01 | Wine grape | mitochondrion, plastid | 68.66 | 72.56 |
| KRH23409 | Soybean | mitochondrion | 68.66 | 69.49 |
| KRH09922 | Soybean | endoplasmic reticulum, nucleus | 68.36 | 69.18 |
| AT3G16310.1 | Thale cress | plastid | 64.78 | 65.96 |
| Solyc03g120880.2.1 | Tomato | nucleus | 97.91 | 65.34 |
| Bra027174.1-P | Field mustard | plastid | 65.07 | 65.27 |
| CDY30157 | Canola | plastid | 65.67 | 51.89 |
| GSMUA_Achr6P14800_001 | Banana | plastid | 34.93 | 51.77 |
| TraesCS3A01G313000.1 | Wheat | nucleus | 44.78 | 46.88 |
| TraesCS3B01G158900.1 | Wheat | nucleus | 44.48 | 46.56 |
| TraesCS3D01G141300.1 | Wheat | nucleus | 43.88 | 46.23 |
| HORVU3Hr1G026980.2 | Barley | nucleus, plastid | 42.69 | 45.98 |
| GSMUA_Achr4P15460_001 | Banana | mitochondrion, plastid | 48.06 | 44.97 |
| Zm00001d008871_P001 | Maize | mitochondrion | 42.99 | 44.72 |
| Os01t0200500-01 | Rice | nucleus | 43.58 | 44.65 |
| EES02290 | Sorghum | nucleus, plastid | 42.69 | 44.41 |
| GSMUA_Achr4P08270_001 | Banana | mitochondrion | 36.42 | 42.81 |
| TraesCS3B01G308400.1 | Wheat | plastid | 32.54 | 34.6 |
| TraesCS3D01G274500.1 | Wheat | plastid | 32.54 | 34.6 |
| HORVU1Hr1G076010.1 | Barley | plastid | 34.03 | 34.44 |
| TraesCS3A01G274800.1 | Wheat | plastid | 31.94 | 34.19 |
| EES19830 | Sorghum | mitochondrion | 33.13 | 34.05 |
| HORVU3Hr1G071060.1 | Barley | plastid | 31.64 | 33.97 |
| TraesCS1D01G342600.1 | Wheat | plastid | 34.33 | 33.82 |
| Zm00001d038803_P001 | Maize | mitochondrion | 32.24 | 33.54 |
| CDX97739 | Canola | plastid | 64.78 | 32.53 |
| Zm00001d010783_P001 | Maize | plastid | 33.13 | 32.08 |
| Os05t0520100-00 | Rice | mitochondrion | 31.64 | 32.02 |
| TraesCS1A01G340600.1 | Wheat | plastid | 31.64 | 31.36 |
Protein Annotations
| EntrezGene:102582355 | MapMan:23.5.1.1.6.5 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005635 | GO:GO:0005643 |
| GO:GO:0006810 | GO:GO:0006913 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0031965 |
| GO:GO:0051028 | InterPro:IPR007846 | InterPro:IPR012677 | UniProt:M0ZRG2 | InterPro:Nucleoporin_NUP53 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF05172 | EnsemblPlantsGene:PGSC0003DMG400002534 | PGSC:PGSC0003DMG400002534 | EnsemblPlants:PGSC0003DMT400006495 | PIRSF:PIRSF038119 | PFscan:PS51472 |
| PANTHER:PTHR21527 | InterPro:RBD_domain_sf | InterPro:RRM_NUP35_dom | SUPFAM:SSF54928 | UniParc:UPI000294ED55 | RefSeq:XP_006343051.1 |
| SEG:seg | : | : | : | : | : |
Description
Nucleoporin NUP53 [Source:PGSC_GENE;Acc:PGSC0003DMG400002534]
Coordinates
chr3:-:60180365..60184172
Molecular Weight (calculated)
36425.0 Da
IEP (calculated)
9.822
GRAVY (calculated)
-0.562
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTAVRTPKT GRQSLFFQDL ATPISSRKSG SKFNTPGQVA AVSALWRENF ASSDLPPPPV FTLEDRSDVS PESGIPDYIT SPEIKSDPRT PVLNSGREFS
101: TPKSKSEAST SYALMGKQQQ QSQQSPLPSL TWWSPTKGSG SAEQDDKGKG SPVEGVVHPG ALITLPPPRE VARPEIRKNS IPVGNLNEEE WVTVYGFSPI
201: DTNSVLREFE KCGVILKHIL GPRDANWMHI LYQNRADAQK ALNKNGMQIN GVLMIGVKPV DPTQRQALDD KLNKQGFIPL PHAPTSKSND PTPFRTSSQP
301: YYLQNGSNSA KQSSGSVATP ARSVVSKIVD LMFGV
101: TPKSKSEAST SYALMGKQQQ QSQQSPLPSL TWWSPTKGSG SAEQDDKGKG SPVEGVVHPG ALITLPPPRE VARPEIRKNS IPVGNLNEEE WVTVYGFSPI
201: DTNSVLREFE KCGVILKHIL GPRDANWMHI LYQNRADAQK ALNKNGMQIN GVLMIGVKPV DPTQRQALDD KLNKQGFIPL PHAPTSKSND PTPFRTSSQP
301: YYLQNGSNSA KQSSGSVATP ARSVVSKIVD LMFGV
001: MSAAAHRTPK SGRQSLLFQD LASPVSARRG KFSSPGQAAA VSALWRENFG GSDLPPPPMY TLDDRSDFSP ESGIADYSAS PDAKSDRRTP FQSSGKNIVT
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV
Arabidopsis Description
NUP35Nuclear pore complex protein NUP35 [Source:UniProtKB/Swiss-Prot;Acc:O04326]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.