Factsheet for PGSC0003DMT400045216

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g076790.2.1	Tomato	cytosol	43.67	77.78
PGSC0003DMT400019823	Potato	cytosol, plastid	36.36	64.97
VIT_02s0012g01570.t01	Wine grape	extracellular	32.09	61.86
KRH39555	Soybean	cytosol	32.62	61.2
KRH74401	Soybean	cytosol	32.44	60.87
GSMUA_Achr4P28860_001	Banana	plastid	31.02	57.81
KRH45421	Soybean	cytosol	30.12	56.9
GSMUA_Achr5P03490_001	Banana	plastid	29.23	52.73
GSMUA_Achr4P16990_001	Banana	cytosol	28.34	52.65
PGSC0003DMT400008172	Potato	cytosol	31.55	51.6
GSMUA_Achr3P03360_001	Banana	cytosol	29.23	49.7
Zm00001d034716_P001	Maize	cytosol, nucleus, peroxisome	18.89	48.4
TraesCS1D01G198500.1	Wheat	cytosol	26.56	48.38
TraesCS1A01G194900.1	Wheat	cytosol	26.56	48.22
TraesCS1B01G209700.1	Wheat	cytosol	26.38	48.21
Os10t0576900-01	Rice	cytosol	26.92	47.34
EER94430	Sorghum	cytosol	27.63	46.83
Zm00001d030090_P001	Maize	cytosol, plastid	27.27	46.79
Zm00001d051557_P001	Maize	plastid	16.4	45.32
AT2G23910.1	Thale cress	cytosol	22.64	41.78
CDX72244	Canola	cytosol	22.28	41.25
Bra024073.1-P	Field mustard	cytosol	22.28	41.25
CDY65186	Canola	cytosol	22.1	40.92
CDY39681	Canola	cytosol	22.1	40.92
Bra032137.1-P	Field mustard	cytosol	22.1	40.92
AT4G30470.1	Thale cress	cytosol	22.1	40.92
CDY39207	Canola	cytosol, extracellular, nucleus	7.49	32.56
PGSC0003DMT400026192	Potato	cytosol	18.0	29.45
PGSC0003DMT400001401	Potato	cytosol	16.76	26.11
PGSC0003DMT400045987	Potato	cytosol	2.85	3.04

Protein Annotations

EntrezGene:102601283	MapMan:19.2.2.1.5.3.3	Gene3D:3.30.40.10	Gene3D:3.40.50.720	InterPro:Epimerase_deHydtase	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0050662	InterPro:IPR001841	InterPro:IPR013083	UniProt:M1BHA7
InterPro:NAD(P)-bd_dom_sf	PFAM:PF01370	PFAM:PF13639	EnsemblPlantsGene:PGSC0003DMG400017542	PGSC:PGSC0003DMG400017542	EnsemblPlants:PGSC0003DMT400045216
PFscan:PS50089	PANTHER:PTHR10366	PANTHER:PTHR10366:SF428	SMART:SM00184	SUPFAM:SSF51735	SUPFAM:SSF57850
UniParc:UPI000294FBF0	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Cinnamoyl-CoA reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400017542]

Coordinates

chr8:+:49391794..49400501

Molecular Weight (calculated)

62739.9 Da

IEP (calculated)

5.040

GRAVY (calculated)

-0.485

Length

561 amino acids

Sequence
(BLAST)

001: MAPALNFNSI SNTVCVMDAS TRLGSSLVKR LLTNGYTVHA ATQNIHNGES SLFLDELECD DDDDKMKKLK IFKSDPFDYH SIVDALKGCC ALFYSFEPPH
101: DHSTYDEYIG EVEVRAAHNV LEACAQTDTI EKVVFTSSAT AIIWGHHEND QNSASMLLDE RHWSDINVCR KFKLWHALSK TLAEKTAWAL AMDRGVNMVS
201: VNAGLLMGPD LTIKNPYLKG AAEMYEDGVF VTVDLDFLVE AHICVYEQIS TYGRYLCFNH IINQTEDAVK LANILSPLPS SPQRCFIQNL LYTWHLRNSP
301: NGTPIDPRVS ANGQLGLDPS IIKSFPTFTY SSVKDYRKES CGLECAICLV EFDNDSILRL VTSCNHVYHQ DCIDLWLESH KTCPVCRANL DSPEVLKKRS
401: QYTSSVTSNS NSNSNSNSNS NNNNNNNNSN NNNVMRDINE NESLEDSLSI AIPDDNNNDD DHKEEEESGC ASATLERVEL QDEEAKFSRS HSTGHSIDRS
501: RGAEDRFTLK LPEHVRAKII KGHNSTKSCT SFGEYKSKTT TGNARFGEVS ESYTVDINKL I

Best Arabidopsis Sequence Match ( AT2G23910.2 )
(BLAST)

001: MNQEKTISCC CVLDASTYVG FWILKRLLTR GYSVHAAIRK NGESVLEEKI RDMEANEERL EVYDVDVLDY QSILISLNNC NAVFCCLDNP EGYDEEKEVD
101: LEVRGAINVV EACARTESIE KIVFSSSLTA AIWRDNIGTQ KDVDEKCWSD LDFCLKKKLW HALAKTQSEK AAWALAMDRM VNMVSVNPGL IVGPSVAQHN
201: PRPTMSYLKG AAQMYENGVL AYVDVEFVAD VHIRAFEDTS ACGRYFCFNQ IVNTEEEALK LVQTLSPLIP MPPR

Arabidopsis Description

At2g23910 [Source:UniProtKB/TrEMBL;Acc:O82219]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.