Factsheet for PGSC0003DMT400019823

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 4
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g061280.2.1	Tomato	cytosol, plastid	91.08	91.96
VIT_02s0012g01570.t01	Wine grape	extracellular	64.33	69.42
KRH39555	Soybean	cytosol	62.74	65.89
KRH74401	Soybean	cytosol	60.83	63.88
KRH45421	Soybean	cytosol	57.96	61.28
GSMUA_Achr4P28860_001	Banana	plastid	57.64	60.13
GSMUA_Achr4P16990_001	Banana	cytosol	53.5	55.63
GSMUA_Achr5P03490_001	Banana	plastid	53.5	54.02
PGSC0003DMT400008172	Potato	cytosol	58.92	53.94
TraesCS1B01G209700.1	Wheat	cytosol	50.96	52.12
TraesCS1D01G198500.1	Wheat	cytosol	50.96	51.95
TraesCS1A01G194900.1	Wheat	cytosol	50.64	51.46
Os10t0576900-01	Rice	cytosol	51.91	51.1
GSMUA_Achr3P03360_001	Banana	cytosol	52.55	50.0
EER94430	Sorghum	cytosol	50.64	48.04
Zm00001d051557_P001	Maize	plastid	30.89	47.78
Zm00001d034716_P001	Maize	cytosol, nucleus, peroxisome	33.12	47.49
Zm00001d030090_P001	Maize	cytosol, plastid	49.36	47.4
AT2G23910.1	Thale cress	cytosol	42.99	44.41
CDX72244	Canola	cytosol	42.68	44.22
Bra024073.1-P	Field mustard	cytosol	42.68	44.22
AT4G30470.1	Thale cress	cytosol	42.04	43.56
CDY65186	Canola	cytosol	40.76	42.24
CDY39681	Canola	cytosol	40.76	42.24
Bra032137.1-P	Field mustard	cytosol	40.76	42.24
CDY39207	Canola	cytosol, extracellular, nucleus	16.24	39.53
PGSC0003DMT400045216	Potato	plastid	64.97	36.36
PGSC0003DMT400026192	Potato	cytosol	32.17	29.45
PGSC0003DMT400001401	Potato	cytosol	31.21	27.22
PGSC0003DMT400045987	Potato	cytosol	2.87	1.71

Protein Annotations

EnsemblPlants:PGSC0003DMT400019823	EnsemblPlantsGene:PGSC0003DMG400007665	EntrezGene:102590098	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
PANTHER:PTHR10366	PANTHER:PTHR10366:SF428	PFAM:PF13460	PGSC:PGSC0003DMG400007665	RefSeq:XP_006367444.1	SEG:seg
SUPFAM:SSF51735	UniParc:UPI000295144E	UniProt:M1ACM4	MapMan:35.1	:	:

Description

Cinnamoyl-CoA reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400007665]

Coordinates

chr6:-:45012522..45015740

Molecular Weight (calculated)

35425.4 Da

IEP (calculated)

5.074

GRAVY (calculated)

-0.218

Length

314 amino acids

Sequence
(BLAST)

001: MAPASYNCIF NTICVMDAST RLGTKLVKRL LKRGYTVHAA IQNHGESSSL KRIECEEKKL KIFESDPFDY HSILDALKGC SGLFYSFEPP ADYPTYDEEM
101: GEVEVRAAHN VLEACAQTDT IEKVVFTSSA TTIIWGHDKD SAPSIDERHW TDINFCRKFK LWHAMSKTLA EKTAWALAMD RGINMVTINS GLLMGPELTI
201: TNPYLKGAAE MYEDGVFVTV DLDFLVDAHI CVYEDIASYG RYLCFNHIIN QKQDALNLVQ MLSPLPSPPQ SLEEDTTIIQ QRISNKKLNK LMVDFRGCQP
301: QIMDQNANQD ICLS

Best Arabidopsis Sequence Match ( AT2G23910.1 )
(BLAST)

001: MNQEKTISCC CVLDASTYVG FWILKRLLTR GYSVHAAIRK NGESVLEEKI RDMEANEERL EVYDVDVLDY QSILISLNNC NAVFCCLDNP EGYDEEKEVD
101: LEVRGAINVV EACARTESIE KIVFSSSLTA AIWRDNIGTQ KDVDEKCWSD LDFCLKKKLW HALAKTQSEK AAWALAMDRM VNMVSVNPGL IVGPSVAQHN
201: PRPTMSYLKG AAQMYENGVL AYVDVEFVAD VHIRAFEDTS ACGRYFCFNQ IVNTEEEALK LVQTLSPLIP MPPRHEKEMQ GSEVYEERLR NKKLNKLVEA
301: GFAC

Arabidopsis Description

At2g23910 [Source:UniProtKB/TrEMBL;Acc:O82219]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.