CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, extracellular, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024073.1-P	Field mustard	cytosol	75.19	32.01
CDX72244	Canola	cytosol	75.19	32.01
AT4G30470.1	Thale cress	cytosol	72.87	31.02
CDY65186	Canola	cytosol	68.22	29.04
CDY39681	Canola	cytosol	68.22	29.04
VIT_11s0037g01030.t01	Wine grape	cytosol	55.81	25.0
Zm00001d051557_P001	Maize	plastid	33.33	21.18
KRH39555	Soybean	cytosol	38.76	16.72
Zm00001d034716_P001	Maize	cytosol, nucleus, peroxisome	27.91	16.44
Solyc06g061280.2.1	Tomato	cytosol, plastid	39.53	16.4
KRH74401	Soybean	cytosol	37.98	16.39
PGSC0003DMT400019823	Potato	cytosol, plastid	39.53	16.24
GSMUA_Achr5P03490_001	Banana	plastid	37.98	15.76
Solyc08g076790.2.1	Tomato	cytosol	37.98	15.56
GSMUA_Achr4P28860_001	Banana	plastid	34.88	14.95
GSMUA_Achr4P16990_001	Banana	cytosol	34.88	14.9
KRH45421	Soybean	cytosol	32.56	14.14
TraesCS1A01G194900.1	Wheat	cytosol	33.33	13.92
TraesCS1D01G198500.1	Wheat	cytosol	32.56	13.64
EER94430	Sorghum	cytosol	34.88	13.6
Os10t0576900-01	Rice	cytosol	33.33	13.48
Zm00001d030090_P001	Maize	cytosol, plastid	34.11	13.46
Solyc03g097170.2.1	Tomato	cytosol	34.11	13.41
TraesCS1B01G209700.1	Wheat	cytosol	31.78	13.36
GSMUA_Achr3P03360_001	Banana	cytosol	34.11	13.33
PGSC0003DMT400008172	Potato	cytosol	34.88	13.12
CDX85588	Canola	cytosol	32.56	11.41
CDX91029	Canola	cytosol	31.01	10.9
CDY09878	Canola	cytosol	31.01	10.87
CDX69564	Canola	cytosol	31.01	10.87
PGSC0003DMT400045216	Potato	plastid	32.56	7.49

Protein Annotations

EnsemblPlants:CDY39207	EnsemblPlantsGene:GSBRNA2T00067424001	Gene3D:3.40.50.720	PANTHER:PTHR10366	PANTHER:PTHR10366:SF390	ProteinID:CDY39207
ProteinID:CDY39207.1	UniParc:UPI0004EE63CB	UniProt:A0A078HMV5	MapMan:35.2	:	:

Description

BnaA03g50190DBnaA03g50190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMV5]

Coordinates

chrLK032443:+:131807..143063

Molecular Weight (calculated)

14853.8 Da

IEP (calculated)

4.613

GRAVY (calculated)

-0.102

Length

129 amino acids

Sequence
(BLAST)

001: MTESLNRYSQ HSGKLKYFPI FLFWFEFDEM VLVTGAAQMY ENGVLAYVDV KFLADVHIRA YEDVSACGRY FCFNQIVNTE EEALKLVESL SPLIPMPPRY
101: ESVMQGSEVY EERLRNNKLS KLVEAGSAC

Best Arabidopsis Sequence Match ( AT4G30470.1 )
(BLAST)

001: MDHDKSTSCC CVLDASTYVG FWILKKLLSR GYSVHAAIRR NGESEIEEMI REMETTEERL VVYDVDVLDY QSILVSLKTC NVVFCCLDSP EGYDEKEVDL
101: EVRGAINVVE ACGRTESIEK IVFSSSLTAS IWRDNIGTQK DVDEKCWSDQ DFCRSKKLWH ALAKMLSEKA AWALAMDRRL NMVSINPGLV VGPSVAQHNA
201: RPTMSYLKGA AQMYENGVLA YVDVKFLADV HIRAFEDVSA CGRYFCFNQI VNTEEEALKL VESLSPLIPM PPRYENEMHG SEVYEERLRN NKLSKLVEAG
301: SAC

Arabidopsis Description

Cinnamoyl-CoA reductase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9M0B3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.