CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY05770
CDY22880
CDY31956
CDY44162

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14700.1	CDY05770	AT5G48930.1	21798944
AT5G14700.1	CDY22880	AT5G48930.1	21798944
AT5G14700.1	CDY31956	AT5G48930.1	21798944
AT5G14700.1	CDY44162	AT5G48930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85588	Canola	cytosol	96.46	96.2
CDY09878	Canola	cytosol	84.2	83.97
CDX69564	Canola	cytosol	83.38	83.15
AT5G14700.1	Thale cress	cytosol	83.11	82.88
KRH56594	Soybean	cytosol	38.15	52.24
KRG93279	Soybean	cytosol	29.97	51.64
VIT_14s0066g01150.t01	Wine grape	cytosol	48.23	49.03
KRG93276	Soybean	cytosol	47.68	48.34
PGSC0003DMT400001401	Potato	cytosol	46.87	47.78
Solyc02g086770.2.1	Tomato	cytosol	46.32	47.22
OQU87211	Sorghum	cytosol	34.33	44.68
TraesCS1A01G417800.1	Wheat	cytosol, peroxisome, plastid	42.23	42.47
Zm00001d044104_P001	Maize	cytosol	42.78	42.2
GSMUA_Achr6P23260_001	Banana	cytosol	41.69	42.15
Zm00001d009666_P001	Maize	cytosol	42.78	42.09
TraesCS3B01G259000.1	Wheat	cytosol, peroxisome, plastid	42.51	41.94
HORVU3Hr1G057200.1	Barley	cytosol	42.51	41.71
TraesCS3A01G229700.1	Wheat	cytosol	41.69	41.46
TraesCS1B01G447900.1	Wheat	cytosol, peroxisome, plastid	42.23	41.44
TraesCS3D01G223500.1	Wheat	cytosol	41.96	41.29
EES18736	Sorghum	cytosol	41.14	41.14
Os01t0639200-01	Rice	cytosol	42.23	40.9
Zm00001d011446_P001	Maize	cytosol	41.69	40.16
GSMUA_Achr5P09070_001	Banana	cytosol, mitochondrion	39.51	40.06
Os05t0578500-01	Rice	cytosol	40.87	39.58
HORVU1Hr1G091400.1	Barley	cytosol	26.98	39.13
CDX72244	Canola	cytosol	27.25	33.0
CDY39681	Canola	cytosol	25.89	31.35
TraesCS1D01G425400.2	Wheat	cytosol	34.33	31.11
CDY65186	Canola	cytosol	25.61	31.02
CDY39207	Canola	cytosol, extracellular, nucleus	10.9	31.01
GSMUA_Achr9P07010_001	Banana	cytosol	33.52	29.93
GSMUA_Achr6P27330_001	Banana	cytosol	25.89	28.27
KXG22093	Sorghum	cytosol	7.36	26.21
HORVU1Hr1G091350.2	Barley	cytosol, plastid	18.8	25.84

Protein Annotations

EnsemblPlants:CDX91029	EnsemblPlantsGene:GSBRNA2T00151793001	Gene3D:3.40.50.720	GO:A0A078DRE4	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0050662	InterPro:Epimerase_deHydtase	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR10366	PANTHER:PTHR10366:SF483
PFAM:PF01370	ProteinID:CDX91029	ProteinID:CDX91029.1	SUPFAM:SSF51735	UniParc:UPI0004EB0091	MapMan:35.1

Description

BnaC02g05680D

Coordinates

chrLK031865:+:414160..418092

Molecular Weight (calculated)

40454.1 Da

IEP (calculated)

6.649

GRAVY (calculated)

-0.283

Length

367 amino acids

Sequence
(BLAST)

001: MRIVSSTEKF SAELKEFMCA AVQRRRDEDG FRGSGGGKSR NAMDLDSDNG NKLVCVTGGV SYLGRAIVKR LLVHGYSVRI VVDCQEDKEK VSEMEADAET
101: ASYGNRITSV VSRLTETERL IKAFDGCDGV FHTAAFVDPA GISGYSKSMA ELEAKVSENV IEACTRTGSV RKCVFTSSLL ACALKDNSFN DLDNSIINEE
201: SWSDEQLCVH NKLWYALGKL KAEKAAWRIA DSKGLKLATI CPALITGPDF FQLNSTSTLA YLKGAKDMYR NRLLATMDVN RLAKIHVRLW EGLGNKTAFG
301: RYICFDTILS KDGAEKLAKD IGVQIEKICC SSDDSEENAE TSSTPQISDK KLLDLMSRTL RSCYHES

Best Arabidopsis Sequence Match ( AT5G14700.1 )
(BLAST)

001: MRIVRATETF SAELKEFMCA AVQRRKDDDG FRGSRGGGKS RNAMDLDSDA GNRLVCVTGG VSYLGRAIVK RLLVHGYSVR IVVDCPEDKE KVSEMEADAE
101: TASFSNMITS VVSRLTEIDS LIKAFDGCAG VFHTSAFVDP AGVSGYSKSM AELEAKVSES VIEACTRTAS VRKCVFTSSL LACAWQKNPC NSLDHSVINE
201: ESWSDEQLCI DNKLWYALGK LKAEKAAWRI ADSKGLKLAT ICPALITGPD FFNRNSTSTL AYLKGAKEMY SNGLLATMDV NRLAKAHVCL WEGLGNKTAF
301: GRYICFDTIL SRDGAEKLAK DIDVQIEKIC GNSNDSDANT ETEASLQISD KKLLDLMSRT LRSCYHES

Arabidopsis Description

Cinnamoyl CoA reductase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LYJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.