Factsheet for GSMUA_Achr9P07010_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr4P01990_001
GSMUA_Achr5P04550_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14700.1	GSMUA_Achr10P...	AT5G48930.1	21798944
AT5G14700.1	GSMUA_Achr4P01990_001	AT5G48930.1	21798944
AT5G14700.1	GSMUA_Achr5P04550_001	AT5G48930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G417800.1	Wheat	cytosol, peroxisome, plastid	45.5	51.23
TraesCS1B01G447900.1	Wheat	cytosol, peroxisome, plastid	45.99	50.53
Os05t0578500-01	Rice	cytosol	45.99	49.87
GSMUA_Achr5P09070_001	Banana	cytosol, mitochondrion	43.8	49.72
GSMUA_Achr6P27330_001	Banana	cytosol	40.15	49.11
TraesCS1D01G425400.2	Wheat	cytosol	47.69	48.4
GSMUA_Achr6P23260_001	Banana	cytosol	41.85	47.38
KRH56594	Soybean	cytosol	24.82	38.06
KRG93279	Soybean	cytosol	18.98	36.62
VIT_14s0066g01150.t01	Wine grape	cytosol	31.87	36.29
KRG93276	Soybean	cytosol	31.87	36.19
Bra008743.1-P	Field mustard	cytosol	31.14	34.78
CDY09878	Canola	cytosol	30.9	34.51
CDX69564	Canola	cytosol	30.9	34.51
AT5G14700.1	Thale cress	cytosol	30.66	34.24
Bra023481.1-P	Field mustard	cytosol	30.17	33.79
CDX85588	Canola	cytosol	30.17	33.7
CDX91029	Canola	cytosol	29.93	33.52
HORVU1Hr1G091350.2	Barley	cytosol, plastid	21.65	33.33
GSMUA_Achr4P16990_001	Banana	cytosol	22.63	30.79
GSMUA_Achr4P28860_001	Banana	plastid	21.65	29.57
GSMUA_Achr5P03490_001	Banana	plastid	21.9	28.94
GSMUA_Achr3P03360_001	Banana	cytosol	22.14	27.58
Solyc08g005120.2.1	Tomato	plastid	0.97	1.67
PGSC0003DMT400045987	Potato	cytosol	1.7	1.33

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	InterPro:3Beta_OHSteriod_DH/Estase	GO:GO:0003674	GO:GO:0003824	GO:GO:0003854
GO:GO:0006629	GO:GO:0006694	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016616
GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr9G07010_001	EnsemblPlants:GSMUA_Achr9P07010_001	EnsemblPlants:GSMUA_Achr9T07010_001	UniProt:M0TY60	InterPro:NAD(P)-bd_dom_sf
PFAM:PF01073	PANTHER:PTHR10366	PANTHER:PTHR10366:SF567	SUPFAM:SSF51735	UniParc:UPI0002953950	SEG:seg

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G07010_001]

Coordinates

chr9:-:4413251..4415582

Molecular Weight (calculated)

45198.3 Da

IEP (calculated)

9.667

GRAVY (calculated)

-0.323

Length

411 amino acids

Sequence
(BLAST)

001: MGVLRSTESL EAEIEEMREA LLRSGGIGRA HVRKAGSGSV QRRADGDGGV GDERAVCVTG GISFVGFAVV NHLLDRGYTV RLALETQEDM DKLRETEMFG
101: EMGRDGVWAV MASVMDLESL CRAFDGCVGV FHTSSVVDPG GLSGYSKQMA QMEVRAAELV VEACVRTQSV RRCVFTSSLL ACVWRENSTP RSSRRPTIVD
201: ENCWSDQRVC RDKKLWFALG KTMAEKAAWR AARGRDVKLV TVCPALVTGP GFLRRNSTSS IAYLKGQRPL PRPSHCRLLG SYISFLGNAC RSSRYAHGGT
301: ARHHRRGEGS RGSRSCVRGN EQHRLWAIHL LRSCHPKGRR GRRTRAAAGS SEQGIQGRPR RLPDMGGALQ PEALEAILFQ EEEVYIRYLL DLAGVVGLHI
401: VYIPGEAHSN T

Best Arabidopsis Sequence Match ( AT5G14700.1 )
(BLAST)

001: MRIVRATETF SAELKEFMCA AVQRRKDDDG FRGSRGGGKS RNAMDLDSDA GNRLVCVTGG VSYLGRAIVK RLLVHGYSVR IVVDCPEDKE KVSEMEADAE
101: TASFSNMITS VVSRLTEIDS LIKAFDGCAG VFHTSAFVDP AGVSGYSKSM AELEAKVSES VIEACTRTAS VRKCVFTSSL LACAWQKNPC NSLDHSVINE
201: ESWSDEQLCI DNKLWYALGK LKAEKAAWRI ADSKGLKLAT ICPALITGPD FFNRNSTSTL AYLKGAKEMY SNGLLATMDV NRLAKAHVCL WEGLGNKTAF
301: GRYICFDTIL SRDGAEKLAK DIDVQIEKIC GNSNDSDANT ETEASLQISD KKLLDLMSRT LRSCYHES

Arabidopsis Description

Cinnamoyl CoA reductase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LYJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.