Factsheet for PGSC0003DMT400045987

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g005120.2.1	Tomato	plastid	25.86	56.9
TraesCS1B01G447900.1	Wheat	cytosol, peroxisome, plastid	2.28	3.21
TraesCS1A01G417800.1	Wheat	cytosol, peroxisome, plastid	2.09	3.01
GSMUA_Achr6P27330_001	Banana	cytosol	1.9	2.98
PGSC0003DMT400026192	Potato	cytosol	1.9	2.92
PGSC0003DMT400019823	Potato	cytosol, plastid	1.71	2.87
PGSC0003DMT400045216	Potato	plastid	3.04	2.85
Os05t0578500-01	Rice	cytosol	1.9	2.64
PGSC0003DMT400008172	Potato	cytosol	1.71	2.62
PGSC0003DMT400001401	Potato	cytosol	1.52	2.22
TraesCS1D01G425400.2	Wheat	cytosol	1.52	1.98
GSMUA_Achr9P07010_001	Banana	cytosol	1.33	1.7
HORVU1Hr1G091350.2	Barley	cytosol, plastid	0.57	1.12

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	InterPro:3Beta_OHSteriod_DH/Estase	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0003854	GO:GO:0005575	GO:GO:0006629	GO:GO:0006694	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0016020	GO:GO:0016021	GO:GO:0016616	GO:GO:0055114	UniProt:M1BIH7
InterPro:NAD(P)-bd_dom_sf	PFAM:PF01073	EnsemblPlantsGene:PGSC0003DMG400017842	PGSC:PGSC0003DMG400017842	EnsemblPlants:PGSC0003DMT400045987	PANTHER:PTHR10366
PANTHER:PTHR10366:SF428	SUPFAM:SSF51735	TMHMM:TMhelix	UniParc:UPI000294D369	SEG:seg	:

Description

Cinnamoyl-CoA reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400017842]

Coordinates

chr8:+:4211870..4214832

Molecular Weight (calculated)

30672.0 Da

IEP (calculated)

4.970

GRAVY (calculated)

0.071

Length

526 amino acids

Sequence
(BLAST)

001: MSICDKKRLK VFCLDLFDYH SIIDALKGCS CLFYSFEPPK DHSTIYDEYM AEIEVRAAHN VLEACAQIDT IEKVIFTSSA TAIIWGFDDK KSSSHVDLDE
101: KHWSDINFCR KYKLWYALSK TLAEKTAWAL AMDRGINMVS INSGLLMDHD LNIKNPYLKG AKEMYENGVF VSVDVDFLVD AHICVYDDVS SYGRYLCFNH
201: IINTIDDAIN LANKLSPLPS SPPRYIXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
301: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
401: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXDIYI YIYIYIYIYI
501: YICLSFLFFL VTDMILLITS ENITKS

Best Arabidopsis Sequence Match ( AT2G23910.1 )
(BLAST)

001: MNQEKTISCC CVLDASTYVG FWILKRLLTR GYSVHAAIRK NGESVLEEKI RDMEANEERL EVYDVDVLDY QSILISLNNC NAVFCCLDNP EGYDEEKEVD
101: LEVRGAINVV EACARTESIE KIVFSSSLTA AIWRDNIGTQ KDVDEKCWSD LDFCLKKKLW HALAKTQSEK AAWALAMDRM VNMVSVNPGL IVGPSVAQHN
201: PRPTMSYLKG AAQMYENGVL AYVDVEFVAD VHIRAFEDTS ACGRYFCFNQ IVNTEEEALK LVQTLSPLIP MPPRHEKEMQ GSEVYEERLR NKKLNKLVEA
301: GFAC

Arabidopsis Description

At2g23910 [Source:UniProtKB/TrEMBL;Acc:O82219]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.